1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGAAGGAGAAGGGATACTAAATCACATGTGTGGCGCAGACTTTGTTCAAAAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAGgtgagacaatcggtagttgctcatgcttgatgcttgcctatctttatttttttagtcagcttaccattttctcctagcattttag
species | Zea mays |
transcript | GRMZM2G166597_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAG GTGTGCAAGTTTGGATGGTGATGCTGATCGACTCGTCTACTTCCGGTTGTCEST: gi|19351029|gb|BM895561.1|BM895561
genomic: AAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAGgtgagacaat ... agcattttagGTGTGCAAGTTTGGATGGTGATGCTGATCGACTCGTCTACTTCCGGTTGTC
EST: AAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAG GTGTGCAAGTTTGGATGGTGATGCTGATCGACTCGTCTACTTCCGGTTGTCEST: gi|87151739|gb|DY396528.1|DY396528
genomic: AAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAGgtgagacaat ... agcattttagGTGTGCAAGTTTGGATGGTGATGCTGATCGACTCGTCTACTTCCGGTTGTC
EST: AAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAG GTGTGCAAGTTTGGATGGTGATGCTGATCGACTCGTCTACTTCCGGTTGTCEST: gi|76293939|gb|DV033507.1|DV033507
genomic: AAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAGgtgagacaat ... agcattttagGTGTGCAAGTTTGGATGGTGATGCTGATCGACTCGTCTACTTCCGGTTGTC
EST: AAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAG GTGTGCAAGTTTGGATGGTGATGCTGATCGACTCGTCTACTTCCGGTTGTC
genomic: AAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAGgtgagacaat ... agcattttagGTGTGCAAGTTTGGATGGTGATGCTGATCGACTCGTCTACTTCCGGTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAGGAGAAGGGATACTAAATCACATGTGTGGCGCAGACTTTGTTCAAAAGGAGCGAGTTACTCCACATGGATTTAACCCTGAAGATGTTGGTGTCAGgtgagacaatcggtagttgctcatgcttgatgcttgcctatctttatttttttagtcagcttaccattttctcctagcattttag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG