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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCCATTTCCGTACAGAAGACTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgttttgccatcaagcaaattcttgttacttttcacatttatgagcacttctggatcagtactttaaaatatttgatgtggtaaaaaaactgtg...

Basic information

species Zea mays
transcript GRMZM2G166345_T03
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86469719|gb|DY236089.1|DY236089
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|71436812|gb|DR817862.1|DR817862
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAAGAGAATCCTACTGCTGCGGGG
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGG
EST: gi|93012239|gb|EB637759.1|EB637759
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|24934254|gb|CA452472.1|CA452472
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|91874367|gb|EB404324.1|EB404324
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|71320983|gb|DR797210.1|DR797210
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|93280899|gb|EB673163.1|EB673163
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|88756567|gb|DY540708.1|DY540708
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|87155285|gb|DY400074.1|DY400074
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATC-TACTGCTGCGGGGA
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGA
EST: gi|56462002|gb|CK986300.1|CK986300
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|38229745|gb|CF920058.1|CF920058
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCATACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|91873663|gb|EB403620.1|EB403620
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCC
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCC
EST: gi|94477637|gb|EB706595.1|EB706595
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|67022300|gb|CO451049.1|CO451049
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|149110255|gb|EE190312.2|EE190312
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|76286901|gb|DV026469.1|DV026469
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|61118563|gb|DN559524.1|DN559524
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGAAAATAATGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: gi|78112560|gb|DV530954.1|DV530954
EST:     CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG                         CCTCCTGNNNNNNNGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCCATTTCCGTACAGAAGACTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgttttgccatcaagcaaattcttgttacttttcacatttatgagcacttctggatcagtactttaaaatatttgatgtggtaaaaaaactgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA