1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCCATTTCCGTACAGAAGACTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgttttgccatcaagcaaattcttgttacttttcacatttatgagcacttctggatcagtactttaaaatatttgatgtggtaaaaaaactgtg...
species | Zea mays |
transcript | GRMZM2G166345_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAAGAGAATCCTACTGCTGCGGGGEST: gi|93012239|gb|EB637759.1|EB637759
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGG
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCTEST: gi|91874367|gb|EB404324.1|EB404324
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCTEST: gi|71320983|gb|DR797210.1|DR797210
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCTEST: gi|93280899|gb|EB673163.1|EB673163
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCTEST: gi|88756567|gb|DY540708.1|DY540708
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCTEST: gi|87155285|gb|DY400074.1|DY400074
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATC-TACTGCTGCGGGGAEST: gi|91873663|gb|EB403620.1|EB403620
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGA
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATCCEST: gi|94477637|gb|EB706595.1|EB706595
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCC
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCTEST: gi|149110255|gb|EE190312.2|EE190312
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCTEST: gi|76286901|gb|DV026469.1|DV026469
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCTEST: gi|61118563|gb|DN559524.1|DN559524
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGAAAATAATGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCTEST: gi|78112560|gb|DV530954.1|DV530954
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
EST: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAG CCTCCTGNNNNNNNGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
genomic: CTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgtt ... ttaaactaagCCTCCTGAAAATAAGGAGAATCCTACTGCTGCGGGGAACAGCAAAACCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAAAAGATGCTGAATCAAGTTCAAAGAAAGCCATTTCCGTACAGAAGACTGCTGACAAGTCAAATGGAAGTGCTGACTCAAAGAAATCCACAAGAGAGgtagtttgttttgccatcaagcaaattcttgttacttttcacatttatgagcacttctggatcagtactttaaaatatttgatgtggtaaaaaaactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa