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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACTGGAAGCATTGATTGCTGCTGTTAACAGCAGTGATAGCAGTCACATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgtgccacgttaccgggttctaagttttcttatgctgcatatatgttaaccttgtttttctatctttacccag

Basic information

species Zea mays
transcript GRMZM2G165926_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165926_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 5
AGAAACTGGAAGCATTGATTGCTGCTGTTAACAGCAGTGATAGCAGTCACATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgtgccacgttac-cgggttctaagtt-ttcttatgctgcatatatgttaaccttgtt-tttctatctttacccag
|||||||||||||  | ||  ||||||| ||||| ||||||||||| ||||| |||||| ||||||| |||||||||||||| || ||||| ||  |||||||||  |||  ||  ||   |||| |||| ||| || || |  || || | || | ||    |  | ||  ||||| | |||
AGAAACTGGAAGCGCTAATCTCTGCTGTGAACAGTAGTGATAGCAGCCACATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaataatgtatcaatttgttcgggctctaggttgttgttttaatgtatttctgctgacaaattaatatccctcttttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32808865|gb|CD961099.1|CD961099
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: gi|84977035|gb|DW475457.1|DW475457
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: gi|32838026|gb|CD977704.1|CD977704
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: gi|211459834|gb|FK984334.1|FK984334
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: gi|34391254|gb|CF384482.1|CF384482
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: gi|148954523|gb|EC899958.2|EC899958
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: gi|28987468|gb|CB351650.1|CB351650
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAG
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAG
EST: gi|71419001|gb|DR804614.1|DR804614
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
EST: gi|40334578|gb|CK368648.1|CK368648
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAGAAGGTGGAAAGCGGTTTTGCTGCTTCCG
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAA-GCGGTTTTGCTGCTTCCG
EST: gi|32806343|gb|CD958577.1|CD958577
EST:     ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAG                         CACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC
genomic: ATTGTTCATATCCCTCCTGGTGAAAATGCCCTCTCTGATGTCCTCCTAAGgtaattgtgt ... ctttacccagCACTCCTATATTTACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCCGC