1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTGTTCTACTCTACGGTCCTCCAGGAACTGGGAAGACCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAGgcgtgtgacttttcacttcattgatggtattcagtatttcttatccttcagatatgttgcttacataatgcctgaaaacag
species | Zea mays |
transcript | GRMZM2G165817_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGTGCTATTATCGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|211475160|gb|FL103093.1|FL103093
genomic: CCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAGgcgtgtgact ... ctgaaaacagATTGTTTCAAGTGCTATTATCGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGTGCTATTATCGACAAATACATTGGAGAAAGTGCTCGTTTGEST: gi|95107783|gb|EB740012.1|EB740012
genomic: CCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAGgcgtgtgact ... ctgaaaacagATTGTTTCAAGTGCTATTATCGACAAATACATTGGAGAAAGTGCTCGTTTG
EST: CCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGTGCTATTATCGACAAA-ACCATTGGAGAAAGTGCTCGTTTEST: gi|148950536|gb|EC896111.2|EC896111
genomic: CCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAGgcgtgtgact ... ctgaaaacagATTGTTTCAAGTGCTATTATCGACAAATAC-ATTGGAGAAAGTGCTCGTTT
EST: CCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAG ATTGTTTCAAGTGCTATTATCGACAAATACATTGGAGAAAGTGCTCGTTTG
genomic: CCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAGgcgtgtgact ... ctgaaaacagATTGTTTCAAGTGCTATTATCGACAAATACATTGGAGAAAGTGCTCGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTTCTACTCTACGGTCCTCCAGGAACTGGGAAGACCCTATTGGCAAGGGCTATCGCAAGTAACATCGATGCCAACTTTTTGAAGgcgtgtgacttttcacttcattgatggtattcagtatttcttatccttcagatatgttgcttacataatgcctgaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG