Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGTATTGGAGCTTTGTGGACTGGCCTTGGTCCAAATGTCGCACGCAATGCCATAATTAACGCTGCCGAGTTGGCCAGCTATGATCAGTTCAAACAGgtacatatcgactctcttatgtctttgtggttgttattatatttcattatcattgttcattcctttgttctgttcttgcag

Basic information

species Zea mays
transcript GRMZM2G165629_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165629_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g74640.3 (Oryza sativa), 5'ss of exon 5
GAAGGTATTGGAGCTTTGTGGACTGGCCTTGGTCCAAATGTCGCACGCAATGCCATAATTAACGCTGCCGAGTTGGCCAGCTATGATCAGTTCAAACAGgtacatatcgactctcttatgtctttgtggttgttattatatttcat---tatcattgttcattcctttgttctgttcttgcag
||||||||||||||||||||||||||||| ||||||||  | ||||||||||| |||||||| ||| |||||||||||||||| || ||  |||||||||| | | | || ||| | |  | | | |  ||||    |  ||  ||   | | | |||||||  ||||||||||||  |||||
GAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGgtgccttttgattctttcacct-tgtattcttgtggccactttctatgtgtgttactgttcatcactttgttctgtttgtgcag

upper sequence: GRMZM2G165629_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S15_443V6.1 (Physcomitrella patens), 5'ss of exon 5
GAAGGTATTGGAGCTTTGTGGACTGGCCTTGGTCCAAATGTCGCACGCAATGCCATAATTAACGCTGCCGAGTTGGCCAGCTATGATCAGTTCAAACAGgt---acatatcgactctcttatgtctttgtggttg-ttattatatttcattatcatt-gttca-------ttcctttgttctgttcttgcag---------------------------------------------------------------
|||||  |   |   ||||||||||| ||||||||||||||||| || || || || || || ||||| ||||||||||| ||||| ||  |||| |||||    | | |    | || |   | ||  || |   || || |||||  |  || ||  || |       |    ||||  ||||  | |||                                                               
GAAGGATTCACAAAATTGTGGACTGGGCTTGGTCCAAATGTCGCTCGTAACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAGgttaggcgtgttccttatcctgatttttgttgataaattgttttattttctgctcttttatttaggaaagttggtgttgtattgttaattcaggaaatgcactacgcaatcgggcaggacgtttgttttactaacatgacaagttgagctttgcag