1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaaattgggtgtattcacgttcttgcactgcttattttgataaaatcctaagagcttgctgaagacgatacgtgctctttccag
species | Zea mays |
transcript | GRMZM2G165535_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTAANTTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAAEST: gi|78118501|gb|DV536885.1|DV536885
genomic: TGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTT-A-TTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAA
EST: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|40334667|gb|CK368737.1|CK368737
genomic: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTATATTGCTGACTTGGATATCCCAATTEST: gi|71449147|gb|DR830197.1|DR830197
genomic: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|71763428|gb|DR961365.1|DR961365
genomic: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: TTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|74245816|gb|DT653730.1|DT653730
genomic: TTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|71299719|gb|DR785870.1|DR785870
genomic: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|32919710|gb|CF024522.1|CF024522
genomic: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTATATTGCTGACTTGGATATCCCAATTEST: gi|14646044|gb|BI180233.1|BI180233
genomic: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|148947648|gb|EC893128.2|EC893128
genomic: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|71773498|gb|DR971398.1|DR971398
genomic: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|148943662|gb|EC888726.2|EC888726
genomic: AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|71299718|gb|DR785869.1|DR785869
genomic: AGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: AAAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTEST: gi|76280414|gb|DV019982.1|DV019982
genomic: AAAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
EST: CCAAAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAG GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
genomic: CCAAAGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaa ... ctctttccagGAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTTGAAATCATTTATCGGAGAAGACAAGCTGAAGgtaagcttaaattgggtgtattcacgttcttgcactgcttattttgataaaatcctaagagcttgctgaagacgatacgtgctctttccag
- - - - - - - - - GGAGAA
- - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - CTGAAG