1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGAAATAGAGGAAAAGATCAACAGGATCAAGTGGTGCCAGACAGCCAACAATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAGgtatggatgcaagttacttctagaagtgctttccaattttctaacagcgtcaatttttaatcctaatctcgtacttaaatctttagtgtaaatctagccc...
species | Zea mays |
transcript | GRMZM2G165418_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAG GTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCCEST: gi|19822589|gb|BQ048613.1|BQ048613
genomic: ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAGgtatggatgc ... tactgtacagGTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC
EST: ATGCTCTCTCCCTTTTGNCTACAAATGATAAAACAATAAAATACTGGAAG GTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCCEST: gi|67025874|gb|CO454623.1|CO454623
genomic: ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAGgtatggatgc ... tactgtacagGTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC
EST: ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAG GTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC
genomic: ATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAGgtatggatgc ... tactgtacagGTTCAAGAGAAGAAAGTAAAACGATTTGCAGTCATGAATTTGGACAGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATAGAGGAAAAGATCAACAGGATCAAGTGGTGCCAGACAGCCAACAATGCTCTCTCCCTTTTGTCTACAAATGATAAAACAATAAAATACTGGAAGgtatggatgcaagttacttctagaagtgctttccaattttctaacagcgtcaatttttaatcctaatctcgtacttaaatctttagtgtaaatctagccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG