1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCCCAGCTACCAGATGCTGCCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaactaacctccccttaactttgcttgcttgcttgcatgtatgtgaacatttaacggtgcaaaggagaaatatgcctttcaagaagctattggat...
species | Zea mays |
transcript | GRMZM2G165195_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAG CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|76010550|gb|DT937720.1|DT937720
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|91052905|gb|EB163323.1|EB163323
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|91054729|gb|EB165147.1|EB165147
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCEST: gi|211298305|gb|FL473376.1|FL473376
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGC
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|13558970|gb|BG550325.1|BG550325
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|148991100|gb|EE032548.2|EE032548
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|71765371|gb|DR963308.1|DR963308
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|32867970|gb|CF007652.1|CF007652
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAG CGACAAGCTGTTGCTGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|71765372|gb|DR963309.1|DR963309
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|78074982|gb|DV503416.1|DV503416
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|76281952|gb|DV021520.1|DV021520
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|32867969|gb|CF007651.1|CF007651
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAG CGACAAGCTGTTGCTGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|76010551|gb|DT937721.1|DT937721
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|211095886|gb|FL432128.1|FL432128
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAGEST: gi|76933730|gb|DV173563.1|DV173563
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
EST: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAA CGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
genomic: CCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaact ... tcttttgcagCGACAAGCTGTTGCAGAGGGTGCTGATGACGACGAGGAAGACCTAGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCCCAGCTACCAGATGCTGCCAGAACACAGAAGATACATGAGGCTTCAACAAGCAGGGTTCCAGAAGAAgtaactaactaacctccccttaactttgcttgcttgcttgcatgtatgtgaacatttaacggtgcaaaggagaaatatgcctttcaagaagctattggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaata