Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTTCATGATGGACCACTTGGTCTTCTACGAATCGAGAGCAGCAGCTGCTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcggtactgcgttttcgctgttccgactgtgtcttgttccggaaattttgaaagatttcttagtaactaatgtttttgtcgtccgtccatag

Basic information

species Zea mays
transcript GRMZM2G165044_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165044_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g06590.1 (Oryza sativa), 5'ss of exon 5
---CGGTTCATGATGGACCACTTGGTCTTCTACGAATCGAGAGCAGCAGCTGCTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcggtactgcgttttcgctgttccgactgtgtcttgttccggaaattttgaaagatttcttagtaactaatgtttttgtcgtccgtccatag
     | | |||||| | || || |   ||  |||||| |||| ||||   |   |||||||||||| ||||||||||||||||||||| ||||| || ||||||   |      ||| ||||| |||        ||  ||     | ||||| ||  |||  | | ||  |||||     | |  |   | ||| | ||
CAATTGATAATGATGCAACAATTTGCTCTCCGCGAATCAAGAGAAGCACAAG---ACCCCCACAGGGCCATGAGACTGGACATTGACAATATGAGTTATGAGgtagaaga----gctg-gtttttgct----tacatgcctcccaccctggaaacttgaaaatctattttcttaact----ctatcatttgctgtcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149082639|gb|EE171841.2|EE171841
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|74234292|gb|DT642206.1|DT642206
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|148928371|gb|EE285057.2|EE285057
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|149037193|gb|EE155279.2|EE155279
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|148963606|gb|EE014646.2|EE014646
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|148938218|gb|EC882505.2|EC882505
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|148943118|gb|EC888176.2|EC888176
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|71766106|gb|DR964043.1|DR964043
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|148999876|gb|EE036910.2|EE036910
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|71420925|gb|DR805237.1|DR805237
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|94477093|gb|EB706051.1|EB706051
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|71760265|gb|DR958202.1|DR958202
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|86466629|gb|DY232999.1|DY232999
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|149042041|gb|EE047016.2|EE047016
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|148949435|gb|EC894894.2|EC894894
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|71774351|gb|DR972229.1|DR972229
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|78110998|gb|DV529395.1|DV529395
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|94477752|gb|EB706710.1|EB706710
EST:     GGACATGAGACTGGACATGGACAACATGAGCTGCGAG                         GACCTGTGGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: GGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|74232028|gb|DT639942.1|DT639942
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|76921859|gb|DV168737.1|DV168737
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|148961832|gb|EE012614.2|EE012614
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|71436822|gb|DR817872.1|DR817872
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|88755341|gb|DY539482.1|DY539482
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|76925038|gb|DV170262.1|DV170262
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|94476101|gb|EB705059.1|EB705059
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|149014262|gb|EE043830.2|EE043830
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|148934246|gb|EC878267.2|EC878267
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|71758169|gb|DR956106.1|DR956106
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|149082698|gb|EE171913.2|EE171913
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|76921857|gb|DV168736.1|DV168736
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|89248748|gb|DY620534.1|DY620534
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|50323081|gb|CO518207.1|CO518207
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|88755287|gb|DY539428.1|DY539428
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|110533295|gb|EE037475.1|EE037475
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|33467803|gb|CF244852.1|CF244852
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|50330081|gb|CO525207.1|CO525207
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|149102323|gb|EE287689.2|EE287689
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|71434518|gb|DR815568.1|DR815568
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|86472396|gb|DY238766.1|DY238766
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
EST: gi|71766107|gb|DR964044.1|DR964044
EST:     CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAG                         GACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC
genomic: CTGACCCCCACAGGGACATGAGACTGGACATTGACAACATGAGCTACGAGgtaagcggcg ... ccgtccatagGACCTGTTGGCTCTGGGAGAAGCTATGGGCAATGTCAACACAGGCCTGGCC