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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGGTAGAAGATGCTACCAAAGTACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAGgtaagaccatcttatatgacttctctattttaaatatttttccagtgttttgtgagctgaaaatgtgatctggaattattgtag

Basic information

species Zea mays
transcript GRMZM2G164956_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164956_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g34910.1 (Oryza sativa), 5'ss of exon 5
GCAAGGTAGAAGATGCTACCAAAGTACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAGgtaagaccatctt-atatgacttctctattttaaatatttttccagtgttttgtg-agctgaaaatgt---gatctgga-attattgtag------
|||| || ||||||| ||| ||||||||||||||||| ||||| || ||| | ||||| |||||||| |||||  |  |||||| | |   | | ||| |||   || || ||  |   | |||||  ||||| ||| |   | | ||||   | |  | |      
GCAAAGTTGAAGATGTTACAAAAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacatctttaaaatccatttctctttctgattttctttaatattattgtgtggctgataatatatcggtatggatgctgtgatggttatag

upper sequence: GRMZM2G164956_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G29060.1 (Glycine max), 5'ss of exon 5
GCAAGGTAGAAGATGCTACCAAAGTACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAGgtaagaccatcttatatgacttctctattttaaatatttttccagtgttttgtgagctgaaaatgtgatctggaat-tattgtag----
||||||||||| ||| ||  ||||| ||||||||||| |||||||| ||| ||||||| ||||| ||  | ||| |    | |   |||  | ||   || ||  ||||       | | ||  | |     ||||| | ||||  | ||||   |    
GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCAAgtatgcttctatgcaatggttacttctttatacttattggat-gttatatttagggtctttaatgttacctggtttctatttgtgccag

upper sequence: GRMZM2G164956_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G38680.1 (Glycine max), 5'ss of exon 5
GCAAGGTAGAAGATGCTACCAAAGTACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAGgtaagaccatcttatatgacttctctattttaaatatttttccagtgttttgtgagctgaaaatgtgatctggaattattgtag----
||||||||||| ||| ||  ||||| ||||||||||| |||||||| ||| ||||||| ||||| ||  | ||| |    | |   |||| | ||   || ||  ||||          |||  |  ||  ||  ||   |||   |||||   |    
GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCAAgtatgcttctatgtgatgattacttccttatacttattggatgttatatttagggtctttaatggtacgctgcttttatttgtgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18964493|gb|BM661037.1|BM661037
EST:     AAGTACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAG                         CTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT
genomic: AAGTACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAGgtaagaccat ... attattgtagCTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT
EST: gi|32928427|gb|CF033239.1|CF033239
EST:     ACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAG                         CTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT
genomic: ACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAGgtaagaccat ... attattgtagCTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT
EST: gi|32846981|gb|CD986662.1|CD986662
EST:     ACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAG                         CTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT
genomic: ACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAGgtaagaccat ... attattgtagCTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT
EST: gi|32929175|gb|CF033987.1|CF033987
EST:     ACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAG                         CTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT
genomic: ACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAGgtaagaccat ... attattgtagCTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT
EST: gi|32928455|gb|CF033267.1|CF033267
EST:     ACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAG                         CTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT
genomic: ACAGACACTTCTGTTCAGTGCCACTCTGCCAGATTGGGTGAATAAGgtaagaccat ... attattgtagCTCTCTATGAGGTTTCTGAAAGTTGACAGGAAAACAGTTGATCTTGTCGGT