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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTCCTAGTTCTTCACATATATTGGTGGGTACTGATATGGCGGATGCTAGTTAAACAGATTCAATCGAAAGGGCGTGTTGGTGATGATGTTCGATCCGgtcagtgaccattgtctctttttccttcatggtgttagatgttttacttcagcagcatcttatttactaaaaacgatatactattgtacag

Basic information

species Zea mays
transcript GRMZM2G163426_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163426_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g20630.2 (Oryza sativa), 5'ss of exon 1
TCACTCCTAGTTCTTCACATATATTGGTGGGTACTGATATGGCGGATGCTAGTTAAACAGATTCAATCGAAAGGGCGTGTTGGTGATGATGTTCGATCCGgtcagtgaccattgtctctttttccttcatggtgttagatgttttacttcagcagcat-cttattta---ctaaaaacgatatactattgtacag
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TCACTTCTAGTTCTTCACATATATTGGTGGGTACTAATATACCGGATGCTAGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGgtaattga---ttccttcatgttactgatttaaataagttttatttctaggactgtatatttatttgtctcataaaactgctcactatcaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091292|gb|DV519666.1|DV519666
EST:     AGTTAAACAGATTCAATCGAAAGGGCGGGTTGGTGATGATGTTCGATCCG                         ATTCTGAAGGCGAAGATGAGCATGAAGATTAACTTTTTAG
genomic: AGTTAAACAGATTCAATCGAAAGGGCGTGTTGGTGATGATGTTCGATCCGgtcagtgacc ... tattgtacagATTCTGAAGGCGAAGATGAGCATGAAGATTAACTTTTTAG
EST: gi|166560934|gb|EG297990.1|EG297990
EST:     AGTTAAACAGATTCAATCGAAAGGGCGTGTTGGTGATGATGTTCGATCCG                         ATTCTGAAGGCGAAGA
genomic: AGTTAAACAGATTCAATCGAAAGGGCGTGTTGGTGATGATGTTCGATCCGgtcagtgacc ... tattgtacagATTCTGAAGGCGAAGA