1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAGgtctgacatgttccacttcctatatgttccattttttttgtattcattacttcaattcttcagttgtttttatcaagtttggtgaattaatattttcag
species | Zea mays |
transcript | GRMZM2G162409_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAG GCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTEST: gi|51592708|gb|CV071854.1|CV071854
genomic: AATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAGgtctgacatg ... atattttcagGCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACT
EST: AAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAG GCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTEST: gi|211106908|gb|FK992455.1|FK992455
genomic: AAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAGgtctgacatg ... atattttcagGCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACT
EST: AAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAG GCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTEST: gi|13149966|gb|BG320288.1|BG320288
genomic: AAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAGgtctgacatg ... atattttcagGCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACT
EST: AAATACAGAACAGCTAGATACAGMCCAGAGTTATCTGAAG GCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTEST: gi|71426491|gb|DR807541.1|DR807541
genomic: AAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAGgtctgacatg ... atattttcagGCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACT
EST: CAGACCAGAGTTATTTGAAG GCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACT
genomic: CAGACCAGAGTTATCTGAAGgtctgacatg ... atattttcagGCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAGgtctgacatgttccacttcctatatgttccattttttttgtattcattacttcaattcttcagttgtttttatcaagtttggtgaattaatattttcag
- - - - - - - - - - - - - - - - - CTGAAG