1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTCCCACTATCAAGTGTGAAAGGTACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttattacttctctgtttgaaaacatttgttctgtttaagttctaagctatgcatttgtactgtcaagttaaattcggatgtttctgccataattg...
species | Zea mays |
transcript | GRMZM2G161969_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTGEST: gi|32932090|gb|CF036902.1|CF036902
genomic: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
EST: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGGGGCTTTTGCGGCTCCAGGGTTAGGTTACGTTGEST: gi|32933945|gb|CF038757.1|CF038757
genomic: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
EST: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTGEST: gi|21809700|gb|BQ668018.1|BQ668018
genomic: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
EST: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGAGGCTTTTGTAGCTCCAGGGTTAGGTTACGTTGEST: gi|32930018|gb|CF034830.1|CF034830
genomic: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
EST: ACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTGEST: gi|166511857|gb|EG058331.1|EG058331
genomic: ACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
EST: TTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTGEST: gi|32934396|gb|CF039208.1|CF039208
genomic: TTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
EST: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTGEST: gi|22472155|gb|BU036635.1|BU036635
genomic: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
EST: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTGEST: gi|20802898|gb|BQ293948.1|BQ293948
genomic: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
EST: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTGEST: gi|20208122|gb|BQ134196.1|BQ134196
genomic: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
EST: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
genomic: TACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... gcttctgtagCCAAGGGTGGGCTGAGGGAGGCTTTTGCAGCTCCAGGGTTAGGTTACGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCCACTATCAAGTGTGAAAGGTACTGGTCCTGATGGGCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttattacttctctgtttgaaaacatttgttctgtttaagttctaagctatgcatttgtactgtcaagttaaattcggatgtttctgccataattg
- - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA