1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAACTCATATGCAAATTCAATTTATGAGGCTTTTCTTCCAAAAGATCACCCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaactgttccatcggtgctctgtaatgtcaccaatgttcgcctgtataataatcccttaccttttttatatacag
species | Zea mays |
transcript | GRMZM2G161728_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAG AGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATCEST: gi|148970443|gb|EE021294.2|EE021294
genomic: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaac ... ttatatacagAGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATC
EST: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAG AGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATCEST: gi|148982152|gb|EE028182.2|EE028182
genomic: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaac ... ttatatacagAGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATC
EST: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAG AGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATCEST: gi|211369326|gb|FL186711.1|FL186711
genomic: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaac ... ttatatacagAGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATC
EST: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAG AGCTAAGTATGAGACACAAGATTTTTTGAAGCCEST: gi|78079893|gb|DV508305.1|DV508305
genomic: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaac ... ttatatacagAGCTAAGTATGAGACACAAGATTTTTTGAAGCC
EST: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAG AGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATCEST: gi|149008427|gb|EE040587.2|EE040587
genomic: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaac ... ttatatacagAGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATC
EST: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAG AGCTAAGTATGAGACACAAGANNNNNNNGAAGCCAAGTTTGCGCATTTTCAEST: gi|71327521|gb|DR800373.1|DR800373
genomic: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaac ... ttatatacagAGCTAAGTATGAGACACAAGATTTTTT-GAAGCCAAGTTTGCGCATTT-CA
EST: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAG AGCTAGGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATCEST: gi|76287384|gb|DV026952.1|DV026952
genomic: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaac ... ttatatacagAGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATC
EST: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAG AGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATC
genomic: CCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaac ... ttatatacagAGCTAAGTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTTCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACTCATATGCAAATTCAATTTATGAGGCTTTTCTTCCAAAAGATCACCCAAAACCCAAACCAGATTCAACGATGGAATATAGGACAAAATTTATAAGgtctgctaactgttccatcggtgctctgtaatgtcaccaatgttcgcctgtataataatcccttaccttttttatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA