Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAGgtaacttcattttttgttgttgtaaacgatgcatgctatatttgatatggaattcttgctctgcaatgttaacctgttgccaagtaaatttaccaatacgatagtgtaataactttttattgattcatgtgatcatgcattgatgaatcacttacatttgccctacttcttgcag

Basic information

species Zea mays
transcript GRMZM2G160842_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160842_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 5'ss of exon 6
ATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAGgtaacttcattttttgttgttgtaaacgatgcatgctatatttgatatggaattcttgctctgcaatgttaacctgttgccaagtaaatttaccaatacgatagtgtaataactttttattgattcatgtgatcatgcattgatgaatcacttacatttgccctacttcttgcag
||||||||||||||| ||||| || ||||| ||||||||| | || |||||||| || || ||||| |||||||| ||||||| ||| |  ||    |  |||||  |||||  | ||| || | |||   ||| | |   | |||   ||  |    |  || |  |     | |  | |   |                                                                     
ATATGATATAGTTGTAGATGCCACGGACAATCTTCCTACTCGATACATGATCAGTGACTGTTGTGTGTTGCTGAATAAGgtaaattcttgcttc--cgaggtaaataatgcagtcaatacttcaaatg---ttcat-caggggaataccaattttcatcttagcatgtaatttagtgagtttcag---------------------------------------------------------------------

upper sequence: GRMZM2G160842_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g56080.1 (Oryza sativa), 5'ss of exon 5
ATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAGgta---acttcattttttgttgttgtaaacgatgcatgctatatttgatatggaattcttgctctgcaatgttaacctgttgccaagtaaatttaccaatacgatagtgtaataactttttattgattcatgtgatcatgcattgatgaatcacttacatttgccctacttcttgcag
|||||| ||||| ||||| |||||  ||||||| |||| | |||| |||||||| ||||| |||||  || |||||||||||   | ||||  |||  || |  | | |  ||  ||  ||| |  ||||        ||    | |  ||    ||  |  |  | | | |   ||   |                                                                            
ATATGACATAGTAGTTGACGCAACAAACAACCTGCCTAGTCGGTACATGATCAGTGATTGTTGTGTCCTGATGAACAAGgtataaagttcagctttgtttctcatcatctctgtttgtaatagtacatataag----ctgtgacggagcgtggggctcctcaccgggagactgcgcaggcccc--------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78106504|gb|DV524922.1|DV524922
EST:     ACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAG                         CCACTTGTATCTGGTGCGGCATTAGGCTTAGAAGGGCAG
genomic: ACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAGgtaacttcat ... cttcttgcagCCACTTGTATCTGGTGCGGCATTAGGCTTAGAAGGGCAG