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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGCAGCCGCAACTTGGATAGGGTACGTAAGTTAAAAAGCGGGATGACAAGATTGACCGCAAGGGTTCAGAAGgtctggttcctgtttgtcatacctcttttggtttgttacctgatacttctctctacagttcttttaggtcccgtttgtttcgttggaatttaattccatt...

Basic information

species Zea mays
transcript GRMZM2G159295_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159295_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g53110.1 (Oryza sativa), 5'ss of exon 5
ATCAGCAGCCGCAACTTGGATAGGGTACGTAAGTTAAAAAGCGGGATGACAAGATTGACCGCAAGGGTTCAGAAGgtctggttcctgtttgtcatacctcttttggtttgttacctgatacttctctctacagttcttttaggtcccgtttgt----ttcgttggaatttaattccatt
|| ||||||||||||||||||||||| || ||||||||||| || |||||| ||||||  || ||||||||||||||||| || ||   | |  ||  |        |   | |  | || ||  || || |  | ||| || |     |  |    |||  || | ||| || |||| 
ATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGgtctgatttcttggtttgctatttgacactactgagtgca-gttaattaactttata--tttttcagataatagtcatgatgttcactgtatttttatgccat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149107575|gb|EE189457.2|EE189457
EST:     TACGTAAGTTAAAAAGCGGGATGACAAGATTGACCGCAAGGGTTCAGAAG                         GTGAGAGATGAGCTTGAACAATTATTGGATGACGACGATGACATGGCTGAT
genomic: TACGTAAGTTAAAAAGCGGGATGACAAGATTGACCGCAAGGGTTCAGAAGgtctggttcc ... tgtttgccagGTGAGAGATGAGCTTGAACAATTATTGGATGACGACGATGACATGGCTGAT
EST: gi|26557372|gb|CA829607.1|CA829607
EST:     TACGTAAGTTAAAAAGCGGGATGACAAGATTGACCGCAAGGGTTCAGAAG                         GTGAGAGATGAGCTTGAACAATTATTGGATGACGACGATGACATGGCTGA
genomic: TACGTAAGTTAAAAAGCGGGATGACAAGATTGACCGCAAGGGTTCAGAAGgtctggttcc ... tgtttgccagGTGAGAGATGAGCTTGAACAATTATTGGATGACGACGATGACATGGCTGA
EST: gi|29544404|gb|CB604784.1|CB604784
EST:     TACGTAAGTTAAAAAGCGGGATGACAAGATTGACCGCAAGGGTTCAGAAG                         GTGAGAGATGAGCTTGAACAATTATTGGATGACGACGATGACATGGCTGAT
genomic: TACGTAAGTTAAAAAGCGGGATGACAAGATTGACCGCAAGGGTTCAGAAGgtctggttcc ... tgtttgccagGTGAGAGATGAGCTTGAACAATTATTGGATGACGACGATGACATGGCTGAT
EST: gi|76291165|gb|DV030733.1|DV030733
EST:     ATGACAAGATTGACCGCAAGGGTTCAGAAG                         GTGAGAGATGAGCTTGAACAATTATTGGATGACGACGATGACATGGCTGAT
genomic: ATGACAAGATTGACCGCAAGGGTTCAGAAGgtctggttcc ... tgtttgccagGTGAGAGATGAGCTTGAACAATTATTGGATGACGACGATGACATGGCTGAT