1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaaaatattttctagctttggtacctacaatcttctgtacttccccatttgtctaatgcttcaggttgttcttttttctgtagatctgtgtac...
species | Zea mays |
transcript | GRMZM2G158584_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|71431329|gb|DR812379.1|DR812379
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|148939981|gb|EC884712.2|EC884712
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|30032065|gb|CB833916.1|CB833916
genomic: GCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTT-GGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|29544094|gb|CB604474.1|CB604474
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|29544577|gb|CB604957.1|CB604957
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|149028385|gb|EE154636.2|EE154636
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|71419899|gb|DR804931.1|DR804931
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|211145652|gb|FL480707.1|FL480707
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|30087079|gb|CB885287.1|CB885287
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCEST: gi|78116857|gb|DV535244.1|DV535244
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaaaatattttctagctttggtacctacaatcttctgtacttccccatttgtctaatgcttcaggttgttcttttttctgtagatctgtgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaata