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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttattgtttcaatctggtgtgctttatagctccatgatgtgttctccagtatcgttgtttataaaatggtcaagagaaacttcttccc...

Basic information

species Zea mays
transcript GRMZM2G158479_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 5'ss of exon 6
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgta--cctgtttatttattgtttcaatct--ggtgtgctttatagctccatgatgtgttctccagtatcgttgtttata-aaatggtcaagagaaacttcttccc
|||||||||||||| ||||||||||| || |||||||||||||| || | |||||||||||| ||||||||||||   ||  || | | |   ||  | ||  ||  |      | ||| | || | |||    |    |   |   | || |||   | ||||    |||      
GCAAGGCACAATGGCCAGAACTATGTGTTTGCTCTTCTTACTGGTTACCGTGATCCACCTGCCGGTGTTCAGgtaaatctcattctctgtcagttataccttaggcatttgcagttgctacttgctatgtgtatcgcccttaattcctttacaaacaataaagatgctcttg-----

upper sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G24620.2 (Glycine max), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttat-tgtttcaatctggtgtgctt--tatagctccatgatgtgttctccagtatcgttgtttataaaatggtcaagagaaacttcttccc
||  | ||||||||||||||||||||||| || ||||| ||||| |||| ||| |||||||||||||||   |||  |  || ||||| |       |||  | |  ||  || ||     | ||   || | |    | |     |  |||||| |        | | | |   
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGACCCACCTGCTGGTGTTTCAgtaagttcttttttatctaaagtcttctattttatttagtaaagtaattttataaatttttctaagttgactgatggaaaatgttaggccaccaatacct---

upper sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttattgtttcaatctggtgtgctttatagctccatgatgtgttctccagtatcgttgtttataaaatggtcaagagaaacttcttccc-----
||  | ||||||||||||||||||||||| || ||||| ||||| |||| ||| |||||||||||||||  ||||  |  || ||| || | | ||  |  | | ||||||   |   | | ||  | |     ||  ||| | |    |  |     | |  ||    | |     
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaag-tcttctactttat---ttagtaaagtaattttatacatt-ttgctcagttgactgatggaaaatgctaggccaccaata

upper sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttattg---tttcaatctggtgtgctttatagctcca--tgatgtgttctccagtatcgttgt-ttataaaatggtcaagagaaacttcttccc
||  | |||||||||||||||||||| || || ||||| ||||| |||| ||| || ||||||||||||  ||||  |  || | ||||    |||  |  |  | ||||| || |||  |  |  ||     || |  |  ||||| |||||      |    |||  || | |   
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatttttaattattatgctt-attgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctaga--ctacgt---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31356708|gb|CD441065.1|CD441065
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|14244836|gb|BG842774.2|BG842774
EST:     TGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: TGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|67028963|gb|CO457712.1|CO457712
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|16379087|gb|BI992745.1|BI992745
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCCCCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|5055406|gb|AI734293.1|AI734293
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|15323508|gb|BI478611.1|BI478611
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|60338899|gb|DN205872.1|DN205872
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|211036752|gb|FL261404.1|FL261404
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|74245922|gb|DT653836.1|DT653836
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|91054777|gb|EB165195.1|EB165195
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTGTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|76283401|gb|DV022969.1|DV022969
EST:     GTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: GTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|16919521|gb|BM074230.1|BM074230
EST:     TGGTTTTCGCTCTTCTAACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: T-GTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|15590213|gb|BI674829.1|BI674829
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|31356905|gb|CD441262.1|CD441262
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|60396397|gb|DN229266.1|DN229266
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|14243082|gb|BG840790.2|BG840790
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|149097934|gb|EE183875.2|EE183875
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|6012601|gb|AW062038.1|AW062038
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|31354314|gb|CD438671.1|CD438671
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|18163834|gb|BM333673.1|BM333673
EST:     GGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTAAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: GGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|78075104|gb|DV503538.1|DV503538
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|40303643|gb|CK348030.1|CK348030
EST:     ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAG                         ATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
genomic: ATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCC
EST: gi|211323658|gb|FL286664.1|FL286664
EST:     TGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGGTGTTCAG                         ATTCGTGARGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGC
genomic: TGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGG-TGTTCAGgtacctgttt ... tgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGC