Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttattgtttcaatctggtgtgctttatagctccatgatgtgttctccagtatcgttgtttataaaatggtcaagagaaacttcttccc...

Basic information

species Zea mays
transcript GRMZM2G158479_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 5'ss of exon 6
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgta--cctgtttatttattgtttcaatct--ggtgtgctttatagctccatgatgtgttctccagtatcgttgtttata-aaatggtcaagagaaacttcttccc
|||||||||||||| ||||||||||| || |||||||||||||| || | |||||||||||| ||||||||||||   ||  || | | |   ||  | ||  ||  |      | ||| | || | |||    |    |   |   | || |||   | ||||    |||      
GCAAGGCACAATGGCCAGAACTATGTGTTTGCTCTTCTTACTGGTTACCGTGATCCACCTGCCGGTGTTCAGgtaaatctcattctctgtcagttataccttaggcatttgcagttgctacttgctatgtgtatcgcccttaattcctttacaaacaataaagatgctcttg-----

upper sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G24620.2 (Glycine max), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttat-tgtttcaatctggtgtgctt--tatagctccatgatgtgttctccagtatcgttgtttataaaatggtcaagagaaacttcttccc
||  | ||||||||||||||||||||||| || ||||| ||||| |||| ||| |||||||||||||||   |||  |  || ||||| |       |||  | |  ||  || ||     | ||   || | |    | |     |  |||||| |        | | | |   
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGACCCACCTGCTGGTGTTTCAgtaagttcttttttatctaaagtcttctattttatttagtaaagtaattttataaatttttctaagttgactgatggaaaatgttaggccaccaatacct---

upper sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttattgtttcaatctggtgtgctttatagctccatgatgtgttctccagtatcgttgtttataaaatggtcaagagaaacttcttccc-----
||  | ||||||||||||||||||||||| || ||||| ||||| |||| ||| |||||||||||||||  ||||  |  || ||| || | | ||  |  | | ||||||   |   | | ||  | |     ||  ||| | |    |  |     | |  ||    | |     
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttcttatcttaag-tcttctactttat---ttagtaaagtaattttatacatt-ttgctcagttgactgatggaaaatgctaggccaccaata

upper sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttattg---tttcaatctggtgtgctttatagctcca--tgatgtgttctccagtatcgttgt-ttataaaatggtcaagagaaacttcttccc
||  | |||||||||||||||||||| || || ||||| ||||| |||| ||| || ||||||||||||  ||||  |  || | ||||    |||  |  |  | ||||| || |||  |  |  ||     || |  |  ||||| |||||      |    |||  || | |   
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatttttaattattatgctt-attgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctaga--ctacgt---