Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaactttaacatctgtttggcttccttttcataatttaaacatgtttttttttattgtatattgccgattgcctgatttgtcttccaaaagttatttgg...

Basic information

species Zea mays
transcript GRMZM2G158162_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 5
TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaactttaacatctgtttggcttccttttcataatttaaacatgtttttttttattgtatattgccgattgcctgatttgtcttccaaaagttatttgg--
|||||||||||| || || ||  |||| |||||||| || || || |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||  |||    |         ||  |  |  |   |        |    ||||| ||| | || ||   |  ||||||| || |       | || |    
TTCAAATTCCACCATTGTCCCCCTGTTTGAGAAGGTTCTAAGCGCCAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTACCAAAAGCCTGTGCGGAGgtatttttt-tgttcacaaccttttgtggttctgcctcctgttaataaaattttagtgt-tgttacctcattactgatttatcgtttttgtatcatattccc

upper sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G38490.1 (Glycine max), 5'ss of exon 2
TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaacttt----------aacatctgtttggcttccttttcata-atttaaacatgtttttttttattgtatattgccgattgcctgat-ttgtcttccaaaagttatttgg---------------------------------------------------------
                 | |||||||| ||||||||  ||||||| ||||||||||| || || || || |||||||| |||||| ||||||| ||||||    |          || || | | |   |   ||   | | || || |     || |||| | |   | ||    |  |    || |  ||  ||   | ||                                                               
-----------------TGCCATTGTTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGTGCTGAGgtatgcctctattaatgaaatatttatctcaatcttttagtacacatgtatatgcagttcttttcaataactttttattaaagaaaaatatcatcaccctgtaattgcagcacatttaatatgacaatttgtacctgaatttcaggcttactttcctcctatttcacag

upper sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 7
TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaactttaacatctgtttggcttccttttcataatttaaacatgtttttttttattgtatattgccgattgcctgatttgtcttccaaaagttatttgg
||  || |||||  | || ||||| || ||||||||  ||||||| ||||||||||| || || || || |||||||| |||||||| ||||| ||||||  |||    | || ||  |||    ||  |||| | | |   |     | || |   |  ||   |||     |  || | |   ||    |     
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtatttttggagtttgattttctttgaatttgtaatatgatctcttcaccctgtaat---tgctgaacattatacaaactggcatgtgaattgcag----

upper sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G40280.1 (Glycine max), 5'ss of exon 4
TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgta----------actttaacatctgtttggcttccttttcata---atttaaacatgtttttttttattgtatattgccgattgcctgatttgtcttccaaaagttatttgg----------------------------------------------------------
||  || || || || || |||||||||||||||||  ||||||| || |||||||| || || || || |||||||| |||||| |||| || ||||||          | |||||  | | | |   | | |||   ||    ||||  || ||| ||||  |||   ||||  |           |  ||  ||   | ||                                                                
TTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAGgtatggctctattaatttaatctttatctcaatccttttgtgtacatgtttacgca-gttcttttaaattacttattatcagagaaaaatatcatcaccctgtaattgcagcacatttaatctgacaattttttaccggaatttcaggcttactttcctcctatttcacag

upper sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT2G30470.1 (Arabidopsis thaliana), 5'ss of exon 5
TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaactttaacatctgtttggc--ttccttttcataatttaaacatgtttttttttattgtatattgccgattgc-ctgatttgtcttccaaaagttatttgg
||  ||||  |  || || ||  | || |||||    || ||||| |||||||| || ||||| || || || |||||||||||||| ||||| ||||||| |||  |||   | |||   |  |||||| |    |  | || |||| |    || |  | ||  |  |||  || | | |                  
TTTGAATTTGAACATTGTACCTCTCTTTGAGAAAACTCTTAGTGCCAGTGATGCTGGTCGCATTGGTCGTCTAGTTCTTCCAAAAGCCTGTGCAGAGgtaaatttcccattcctatggtgatgtcttttcttgtccttgaaatattttgtagagttatg-actgatgtctgcattggtatatag----------------

upper sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 5
TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaacttt--aacatctgtttggcttccttttcataatttaaacatgtttttttttattgtatattgc-cgattgcctgatttgtcttccaaaagt-tatttgg-------------
||  |||||||| || || ||||| ||||||||||| |||||||| |||||||| || || || || ||  | || || |||||||| ||||| || |||| |||  || |   ||    ||   |     |  ||     ||| |   || | || | ||||    |   |  |   ||   || || | || ||    |             
TTTGAATTCCACCATTGTGCCATTATTCGAGAAGGTTCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTCCTCCCAAAAGCATGTGCTGAAgtaagttttcaaaagtagtcatcctcaatacctttgtttcttgtatgctagcttgtgttatttattttgtggaggtttttcttccttttcatatgtataaactgtaagtcaatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5268958|gb|AI770922.1|AI770922
EST:     GAGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAG                         GCATATTTTCCCCCAATTTCTCAACCAGAAGGACGCCCCTTGACAATTCAA
genomic: GTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaactttaa ... ctctgtgtagGCATATTTTCCCCCAATTTCTCAACCAGAAGGACGCCCCTTGACAATTCAA
EST: gi|67040653|gb|CO466908.1|CO466908
EST:     GTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAG                         GCATATTTTCCCCCAATTTCTCAACCAGAAGGACGCCCCTTGACAATTCAA
genomic: GTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaactttaa ... ctctgtgtagGCATATTTTCCCCCAATTTCTCAACCAGAAGGACGCCCCTTGACAATTCAA
EST: gi|13150757|gb|BG321079.1|BG321079
EST:     GTSATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAG                         GCATATTTTCCCCCAATTTCTCAACCAGAAGGACGCCCCTTGACAATTCAA
genomic: GTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaactttaa ... ctctgtgtagGCATATTTTCCCCCAATTTCTCAACCAGAAGGACGCCCCTTGACAATTCAA