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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCCAGTAACTGGTCAAAGAATATTACTTCGAAATACATCATACCGTGATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAGgtatctgggttagcattcttgcaaatattggtttaaagtagtgcctactaagaatgcctaagaattgtagcaaacgtcctatagttatagcgtctatgtg...

Basic information

species Zea mays
transcript GRMZM2G158097_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158097_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g36062.1 (Oryza sativa), 5'ss of exon 5
TACTCCAGTAACTGGTCAAAGAATATTACTTCGAAATACATCATACCGTGATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAGgtatctgggttagcattcttgcaaatattggtttaaagtagtgcct-actaagaatgcctaagaattgtagcaaacgtcctatagttatagcgtctatgtg-
|||||||||||||||||||||||||||| ||||| ||||| ||||| | |||||||||||||| ||  |||| ||||  |||| |||  | |||||||||||||     |||| |||||||||  || || ||| || || ||  | |||||   | |||   | ||| || ||   |  || | |  ||  |  | | || 
TACTCCAGTAACTGGTCAAAGAATATTAGTTCGAGATACACCATACAGGGATCAAGTTTTTGAAGCTTTAGTGAAAGAATTGAAGAGTTTGACTACCAAGgtattgaaattagaattcttgcagttactgctttgaattattgttttactaacttttcctgcta-ttgaag-aattataataaaatgctattgcttctttga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76922721|gb|DV169140.1|DV169140
EST:     ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAG                         ATGAATGTGTCATCATTACATATTACGTTTCCGTCCGAAAGTGAATT
genomic: ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAGgtatctgggt ... tgcatttcagATGAATGTGTCATCATTACATATTACGTTTCCGTCCGAAGGTGAATT
EST: gi|71766887|gb|DR964824.1|DR964824
EST:     ATCAAGTTTTTGACGCACTAGTCNAAGGTTTGATGAGCCTCACTACCAAG                         ATGAATGTGTCATCATTACATATTACGTTT
genomic: ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAGgtatctgggt ... tgcatttcagATGAATGTGTCATCATTACATATTACGTTT
EST: gi|71318422|gb|DR795977.1|DR795977
EST:     ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAG                         ATGAATGTGTCATCATT
genomic: ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAGgtatctgggt ... tgcatttcagATGAATGTGTCATCATT