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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagcttggcatgtcttctgtccctattatctagtgttctcgatattttctttggattgtatctaaacaccaaatcatcagcgtgatatattctt...

Basic information

species Zea mays
transcript GRMZM2G157836_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157836_T07 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 5'ss of exon 3
GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtg-aaatagcttggcatgtcttctgtccctattatctagtgttctc-gatattttctttggattgtatctaaacaccaaatcatcagcgtgatatattctt-----
|||||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||||  | |||  ||||| ||| || ||||| | | ||||  |||||||  ||| |||| ||  ||| |  ||     |  ||| ||  |  |||| | |  ||     
GTTGCTTGGGCATTGTTGATGGAGATGATGTTGAGCTTAATAACCTTCACCGACAGgtacagataatttggcgtgtattttgtccatgt-atcttctgttctctaatactttcatt--attttccctt----ctgaattatttgaatgatgtttgattactga