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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGGACCTCCGGGTGGACCCGGACAAGGTGACGCGCGTCAGCCTCGGGGAGAAGGCGTTCGAGAAGGCCATCGTCTCCCATGGCGATCACGTCGTCAGgtgaggcagctaggggcgcgcgggggggccatgcacctgcacattgttttccagttacaaccaaccctgtccagtacgtccggatccggcgatgacatgtcgtcataaataaatccag

Basic information

species Zea mays
transcript GRMZM2G157760_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157760_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g03610.1 (Oryza sativa), 5'ss of exon 4
AGCAGGACCTCCGGGTGGACCCGGACAAGGTGACGCGCGTCAGCCTCGGGGAGAAGGCGTTCGAGAAGGCCATCGTCTCCCATGGCGATCACGTCGTCAGgtgagg-cagctaggggcgcgcgggggggcca-tgcacctgcacattgttttccagttacaaccaaccctgtccagtacgtccggatccggcgatgacatgtcgtcataaataaatccag
| |||||||||  ||| || || |||| |||||||||| ||||||||||||||||||| | |||||||||||| ||| ||||||| | |||| |  ||||||||   |||||   |   |  |   ||   | |   | || |||   | |||       |||   |  ||||    | |    |       | |  | |||  |  |  |         
ATCAGGACCTCAAGGTCGATCCCGACATGGTGACGCGCCTCAGCCTCGGGGAGAAGGCCTACGAGAAGGCCATTGTCACCCATGGAGCTCACATTATCAGgtgatttcagctttagtaacatgacaggtttagtttgcatgtacagcttattctgaactgaact--ctgtgtctgacaggattagtgttcttgtt--cttgttcttgttcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148943431|gb|EC888490.2|EC888490
EST:     GAGAAGGCGTTCGAGAAGGCCATCGTCTCCCATGGCGATCACGTCGTCAG                         GTTCACGCAGCGGAACCTACTGCGCATTTTCCCGCGGTCGACGCGCATCAC
genomic: GAGAAGGCGTTCGAGAAGGCCATCGTCTCCCATGGCGATCACGTCGTCAGgtgaggcagc ... ataaatccagGTTCACGCAGCGGAACCTACTGCGCATTTTCCCGCGGTCGACGCGCATCAC