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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAACACTGTGGATCGCTGACAGAAGCAGTCATCCGTAACTTCACACGTCATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattatttcctcgttttgaaattctagccaataatatcttaacttacctactatttaaatttaaattttaacctacaaaattaatatcttgccccccc...

Basic information

species Zea mays
transcript GRMZM2G156800_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156800_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g55560.2 (Oryza sativa), 5'ss of exon 5
ATCAACACTGTGGATCGCTGACAGAAGCAGTCATCCGTAACTTCACACGTCATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattatttcctcgttttgaaattctagccaataatatcttaacttacctactatttaaatttaaattttaacctacaaaattaatatcttgccccccc--
||||||| |||||| |  |||||||| |||| ||||| | |||||| || ||||| || || || ||||| ||||||||||| || ||||||||||||||||||   ||| ||| ||||    ||  |     | |  |  ||| |  ||  ||   ||  |  || ||||     ||  |  |  | |   || |      
ATCAACATTGTGGAGCAATGACAGAATCAGTAATCCGCAGCTTCACCCGCCATATACTTAAAGGCCTTGCCTTTTTACATAGTCAGAAGATTATGCATAGgtaacc-ttttctcttttttctgtttcatttgtttaactaataa-tggccatctcactatgtgaaagttttcttgaacttaccttttgttcagctcttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156020|gb|DY400809.1|DY400809
EST:     CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAG                         GGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
genomic: CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattattt ... gctcttgcagGGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
EST: gi|26559130|gb|CA831365.1|CA831365
EST:     CATATTCTCAAGGGGCTTGCTTTTTTACATAGCCAAAAGATTATGCATAG                         GGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGAGAAGTGAAATT
genomic: CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattattt ... gctcttgcagGGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
EST: gi|22542085|gb|BU092523.1|BU092523
EST:     CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAG                         GGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
genomic: CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattattt ... gctcttgcagGGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
EST: gi|60345120|gb|DN212093.1|DN212093
EST:     CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAG                         GGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
genomic: CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattattt ... gctcttgcagGGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
EST: gi|22473422|gb|BU037902.1|BU037902
EST:     CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAG                         GGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
genomic: CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattattt ... gctcttgcagGGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
EST: gi|50338068|gb|CO533194.1|CO533194
EST:     CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAG                         GGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
genomic: CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattattt ... gctcttgcagGGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
EST: gi|87157200|gb|DY401989.1|DY401989
EST:     CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAG                         GGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
genomic: CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattattt ... gctcttgcagGGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
EST: gi|26558715|gb|CA830950.1|CA830950
EST:     CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAG                         GGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
genomic: CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattattt ... gctcttgcagGGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
EST: gi|6031429|gb|AW076331.1|AW076331
EST:     CATAGGGTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAG                         GGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT
genomic: CATATTCTCAAGGGTCTTGCTTTTTTACATAGCCAAAAGATTATGCATAGgtaattattt ... gctcttgcagGGATATCAAAGGGGCAAATTTGTTAGTTGATATTAACGGTGTAGTGAAATT