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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaataggcaaatgagcaatattgttcctctacttattaattacgattgatgatcaatgtggcctgaaggcaaaaaaatgtttcaaataaacag

Basic information

species Zea mays
transcript GRMZM2G155962_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155962_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g32150.1 (Oryza sativa), 5'ss of exon 5
GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaataggcaaatgagcaatat---------tgttcctctacttattaattacgattgatgatcaatgtggcctga---aggcaaaaaaatgtttcaaataaacag
||||| || ||||||||  |||||||||| ||||||||||| || |||||||||||||| |    ||||| || ||  |||         |||||   |   | || ||||   |  |||||        |   |   ||   | ||||||  | |||   | ||
GAAAAGTATCGTGCTGTCCGGTTCAACCCCAACTTATGGCCGTCAGGTCAAAAGgtttgtagg--ggcaactgtgctgtataaattttcatgttctcttgaatgttgattatcgtaaatgatttggacttcacaagtcagaacacaaaatgccttaaaattatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93284051|gb|EB676315.1|EB676315
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|60397566|gb|DN230382.1|DN230382
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|20507977|gb|BQ279847.1|BQ279847
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGGGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|21987683|gb|BQ779211.1|BQ779211
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGGGAACTTGGA
genomic: A-TACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|76909087|gb|DV163216.1|DV163216
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|101390398|gb|EB817133.1|EB817133
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|88748896|gb|DY533037.1|DY533037
EST:     ACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
genomic: ACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|26456812|gb|CA828395.1|CA828395
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGGGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|211322964|gb|FL249422.1|FL249422
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGGGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|78090807|gb|DV519181.1|DV519181
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|26558292|gb|CA830527.1|CA830527
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGGGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|76909089|gb|DV163217.1|DV163217
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|60357568|gb|DN224541.1|DN224541
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: gi|211320798|gb|FL249415.1|FL249415
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGC
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGC
EST: gi|211320801|gb|FL249418.1|FL249418
EST:     AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGSCATCTGGTCAAAAG                         ATGACCAATGAGGTTGGAAGG
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGG