1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATGgtaaaatagttttaatcctttttactagtttatttatgtttgatttaattaaacattctttcgctaaaactgctcttaactatttgcag
species | Zea mays |
transcript | GRMZM2G155729_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATG CCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTAEST: gi|74243750|gb|DT651664.1|DT651664
genomic: AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATGgtaaaatagt ... ctatttgcagCCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTA
EST: AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATG CCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTAEST: gi|33468149|gb|CF245198.1|CF245198
genomic: AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATGgtaaaatagt ... ctatttgcagCCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTA
EST: AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATG CCCCAGGTAGCACAGTGCAAATTCACTGEST: gi|148942820|gb|EC887853.2|EC887853
genomic: AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATGgtaaaatagt ... ctatttgcagCCCCAGGTAGCACAGTGCAAATTCACTG
EST: AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATG CCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTA
genomic: AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATGgtaaaatagt ... ctatttgcagCCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATGgtaaaatagttttaatcctttttactagtttatttatgtttgatttaattaaacattctttcgctaaaactgctcttaactatttgcag
- - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG