1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGCATCAGAGGCTCAACACTCTGATGAAGGGAGAGCTGATAAAAGGCTTGTTGCCACAGAGTAGTGTCCGTGCTGATTACACTGTCCAGAGAGTTCAAGgtgagtatcttgctttcacggtttcgccttttctcaaagtagccacctgcagatctttttgttgaactagtgctggtataacttgtgtgcttctttctcaatgaag
species | Zea mays |
transcript | GRMZM2G154316_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTGCCACAGAGTAGTGTCCGTGCTGATTACACTGTCCAGAGAGTTCAAG AACTTGCTGAAGGAACATGCTTGAAGAATTATGATTACATGGGTCATGGAAEST: gi|211367256|gb|FL208833.1|FL208833
genomic: GTTGCCACAGAGTAGTGTCCGTGCTGATTACACTGTCCAGAGAGTTCAAGgtgagtatct ... ctcaatgaagAACTCGCTGAAGGAACATGCTTGAAGAATTATGATTACATGGGTCATGGAA
EST: GTTGCCACAGAGTAGCGTCCGTGCTGATTACACTGTCCAGAGAGTTCAAG AACTCGCTGAAGGAACATGCTTGAAGAATTATGATTACATGGGTCATGGAAEST: gi|32934941|gb|CF039753.1|CF039753
genomic: GTTGCCACAGAGTAGTGTCCGTGCTGATTACACTGTCCAGAGAGTTCAAGgtgagtatct ... ctcaatgaagAACTCGCTGAAGGAACATGCTTGAAGAATTATGATTACATGGGTCATGGAA
EST: GTTGCCACAGAGTAGTGTCCGTGCTGATTACACAGTCCAGAGAGTTCAAG AACTTGCTGAAGGAACATGCTTGAAGAATTATGATTACATGGGTCATGGAA
genomic: GTTGCCACAGAGTAGTGTCCGTGCTGATTACACTGTCCAGAGAGTTCAAGgtgagtatct ... ctcaatgaagAACTCGCTGAAGGAACATGCTTGAAGAATTATGATTACATGGGTCATGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCATCAGAGGCTCAACACTCTGATGAAGGGAGAGCTGATAAAAGGCTTGTTGCCACAGAGTAGTGTCCGTGCTGATTACACTGTCCAGAGAGTTCAAGgtgagtatcttgctttcacggtttcgccttttctcaaagtagccacctgcagatctttttgttgaactagtgctggtataacttgtgtgcttctttctcaatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT