1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGATGAAGATGGCGACGACGACGACACCGAAGCTCTAATGGCAGAGCTTGAGAGGATTAAGAAAGAGAGAGCAGAGGAGAAGCTTAGAAAGgtttgttgtgtcataattttatgtttttgtacatttagattatgagggacatgacgagaattgttccatttcag
species | Zea mays |
transcript | GRMZM2G154278_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGAGCTTGAGAGGATTAAGAAAGAGAGAGCCGAGGAGAAGCTTAGAAAG GAGCGGCAACAAGCCGAGGAGGAGGCCCAGATGAAGGAGGCTGAACTGATGEST: gi|37376787|gb|CF624950.1|CF624950
genomic: CAGAGCTTGAGAGGATTAAGAAAGAGAGAGCAGAGGAGAAGCTTAGAAAGgtttgttgtg ... tccatttcagGAGCGGCAACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: GAGA-GATTATGAAAGAGAGAGCAGAGGAGAAGCTTAGAAAG GAGCGGCAACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: GAGAGGATTAAGAAAGAGAGAGCAGAGGAGAAGCTTAGAAAGgtttgttgtg ... tccatttcagGAGCGGCAACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGAAGATGGCGACGACGACGACACCGAAGCTCTAATGGCAGAGCTTGAGAGGATTAAGAAAGAGAGAGCAGAGGAGAAGCTTAGAAAGgtttgttgtgtcataattttatgtttttgtacatttagattatgagggacatgacgagaattgttccatttcag
- - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC