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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAGTCTGTGTGAGCGGCCACACCTTCTTCGCATAAAATATTATGGTAACTTTGACAGACCTTTAGGCAGGTTTTTGCGTGACCAGCTATTTGATCAGgttagactgagctcttccacatctatattttctttaaaaccttgtattgtagttaactttcatttttatttcag

Basic information

species Zea mays
transcript GRMZM2G153722_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153722_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 5'ss of exon 5
AGAGAGTCTGTGTGAGCGGCCACACCTTCTTCGCATAAAATATTATGGTAACTTTGACAGACCTTTAGGCAGGTTTTTGCGTGACCAGCTATTTGATCAGgttagactgagctcttccacatctatattttctttaaaaccttgtattgtagttaactttcat-ttttatttcag
||| | | | ||| |||||||||||||||| |||||||| |||||||| ||||||||||  |||||||| || ||| ||||||||||||| ||||||||||||||| ||   |  || |  || ||    |  |  |||| || |||  |  |||||||| |  |||| ||||||
AGAAACTGTTTGTCAGCGGCCACACCTTCTCCGCATAAAGTATTATGGCAACTTTGACAAGCCTTTAGGAAGATTTCTGCGTGACCAGCTCTTTGATCAGgttagattgtcattctcgaattcaat----ttatagaaactttatatactgcttaactttgacattttgtttcag

upper sequence: GRMZM2G153722_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 8
AGAGAGTCTGTGTGAGCGGCCACACCTTCTTCGCATAAAATATTATGGTAACTTTGACAGACCTTTAGGCAGGTTTTTGCGTGACCAGCTATTTGATCAGgttagactgagctcttc-----cacatctatat-tttctttaaaaccttgtattgtagtta-actttcatttttatttcag----------------
|   |   ||||||||||| |||| ||  |||| |||||||||||||| | || ||| |  ||||||||  ||||||| || || ||| |||||||||||||     |   ||||||     ||    |||||  ||||||            |  |   | | ||| |  || | |  |                 
AAGTACCGTGTGTGAGCGGGCACATCTCTTTCGAATAAAATATTATGGAAGCTCTGATAAGCCTTTAGGGCGGTTTTTACGAGAGCAGTTATTTGATCAGgtattttttttctcttcttttacatgattatatacttctttccttgtcaaccctacaagcacatttttacattgactagactcattccatttattag