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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTAGGTTCTTTTACTGGGGGTTCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttgaactatttagttgtaacttgtaagtgtacactgttatcttttgtgaaactgacacacgggcatatgcag

Basic information

species Zea mays
transcript GRMZM2G153704_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153704_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 5
CACTAGGTTCTTTTACTGGGGGTTCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgt-------tttgaactatttagttgtaacttgtaa-gtgtac------------------actgttatcttttgtgaaactgacacacgggc-atatgcag
||  ||||||||||||||| ||| |||| || || |||||||| || ||| | || ||||||||||||||| |||| || ||| ||||||||||| ||||||||||       || ||   |||  ||| ||||| | || ||  ||                  | ||| |||    |  || || ||||| |    || |||||
CAGCAGGTTCTTTTACTGGAGGTGCTTTAGCTGACAAATTTGGACGAACACGGACGTTCATCCTGGATGCAATCCCTCTCGCTGTAGGTGCATTCCTGAGgtgtgtctatagattcgattaattgtgttttaactaggaatgtacacttgcttaagaaaaccgctattgtcatccaacggaaacctaacacatgaaagatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355374|gb|CD439731.1|CD439731
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|149082633|gb|EE171834.2|EE171834
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|149083192|gb|EE172463.2|EE172463
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|31355588|gb|CD439945.1|CD439945
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|148996907|gb|EE035711.2|EE035711
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|211063244|gb|FL401231.1|FL401231
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTTGCT-GCTG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATT-GCTTGCTG
EST: gi|31354767|gb|CD439124.1|CD439124
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTG
EST: gi|78078828|gb|DV507240.1|DV507240
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|211050167|gb|FL124868.1|FL124868
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|148981335|gb|EE027589.2|EE027589
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|148977355|gb|EE026050.2|EE026050
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|148971787|gb|EE022525.2|EE022525
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCCAGATATCCGCACAATGATTATTGGCCGATTGCTTGC
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGC
EST: gi|148953947|gb|EC899333.2|EC899333
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|31355150|gb|CD439507.1|CD439507
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|78075828|gb|DV504262.1|DV504262
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|149055222|gb|EE156147.2|EE156147
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTG