1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTGGGTACGTGCCTCTTGCACATTTTGATTGGAAACAAACATAGGGAGATGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaatgttcctctccagttttttcaggcctgtgcgctgagttgctgacacagaacataatttacagatcatttacatgaattaaattatctggtataaattttactgtaacttcaatggtgattaacaacaccttaataaatttgtttttatgccatag
species | Zea mays |
transcript | GRMZM2G153434_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGCTTGTG GATGATCATGGAAATTCATCGCTTAGEST: gi|211278622|gb|FL264828.1|FL264828
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAG
EST: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGAEST: gi|89106847|gb|DY577064.1|DY577064
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
EST: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGAEST: gi|89106878|gb|DY577095.1|DY577095
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
EST: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGAEST: gi|26558987|gb|CA831222.1|CA831222
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
EST: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGAEST: gi|211278621|gb|FL264827.1|FL264827
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
EST: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAACTGGA
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGGTACGTGCCTCTTGCACATTTTGATTGGAAACAAACATAGGGAGATGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaatgttcctctccagttttttcaggcctgtgcgctgagttgctgacacagaacataatttacagatcatttacatgaattaaattatctggtataaattttactgtaacttcaatggtgattaacaacaccttaataaatttgtttttatgccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG