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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAAGAGGTTAAGCAGCACAAAGCAGGAGATTGTATTTGGACAGTTCTCAAAGGCCGCGTGTACAACATTGCTCCATACATGAAATTTCATCCTGGAGgtaaccatagtttcagttcattcagagttgttagtttcagaaccagtgttctcatctcacaaggcacaaccttttctgtatcatgatacatttgcag

Basic information

species Zea mays
transcript GRMZM2G152438_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152438_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g12830.2 (Oryza sativa), 5'ss of exon 3
TTGGAAGAGGTTAAGCAGCACAAAGCAGGAGATTGTATTTGGACAGTTCTCAAAGGCCGCGTGTACAACATTGCTCCATACATGAAATTTCATCCTGGAGgtaaccata-gtttcagttcattcagagttgttagtttcag----------aaccagtgttctcatctcacaaggc--acaaccttttctgtatcatgatacatttgcag----------------------------------
 | ||||| ||||| ||||| ||| |||||||| |||||||||| ||| | ||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |      |  |   |  | |||||||          | |   ||||| | | ||||||      ||  |||    ||   || || | | |                                      
CTAGAAGAAGTTAAACAGCATAAAACAGGAGATAGTATTTGGACTGTTTTGAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAGgtaaccataagttttaacctgatgtggaatacttgtttcagttcttttcgtagctgctgttcacct-tcacaatttctgcagacttcagagtgctat-atgcttctattttatgtgtaacaagtacttttatgggcatttgcag

upper sequence: GRMZM2G152438_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv13s0064g00450.t01 (Vitis vinifera), 5'ss of exon 4
TTGGAAGAGGTTAAGCAGCACAAAGCAGGAGATTGTATTTGGACAGTTCTCAAAGGCCGCGTGTACAACATTGCTCCATACATGAAATTTCATCCTGGAGgtaaccatagtttcagttcattcagagttgttagtttcagaa---ccagtgttctc--atctcacaaggcacaaccttt-tctgtatcatgatacatttgcag
 || | || ||||| ||||| | |   | || ||  || ||||| ||||| |||||||| || |||||  |  ||||||| ||||||||||||||||||||||   || |  |    | || |  |  | | |  |  | ||    | ||||      ||||   | || |    | |  |||  ||  |||     ||    
ATGAATGAAGTTAAACAGCATAGAATGGAAGGTTCCATGTGGACTGTTCTGAAAGGCCGTGTATACAATTTGTCTCCATATATGAAATTTCATCCTGGAGgtatgaattggattttattatgctaaaatctcaactggacaaaattctgtgtctctgtatcttcaatggaattgtcatgatctaaattctgacgaggtta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78077673|gb|DV506107.1|DV506107
EST:     CAAAGGCCGCGTGTACAACATTGCTCCATACATGAAATTTCATCCTGGAG                         GTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCA
genomic: CAAAGGCCGCGTGTACAACATTGCTCCATACATGAAATTTCATCCTGGAGgtaaccatag ... acatttgcagGTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCA
EST: gi|50328462|gb|CO523588.1|CO523588
EST:     CAAAGGCCGCGTGTACAACATTGCTCCATACATGAAATTTCATCCTGGAG                         GTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCA
genomic: CAAAGGCCGCGTGTACAACATTGCTCCATACATGAAATTTCATCCTGGAGgtaaccatag ... acatttgcagGTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCA
EST: gi|78122153|gb|DV540537.1|DV540537
EST:     CAAAGGCCGCGTGTACAACATTGCTCCATACATGAAATTTCATCCTGGAG                         GTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCA
genomic: CAAAGGCCGCGTGTACAACATTGCTCCATACATGAAATTTCATCCTGGAGgtaaccatag ... acatttgcagGTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCA