Sequence
atgc intronic sequence ATGC exonic sequenceACTATTATCGTCTTGTTCGACGCATGAAGAAGCTATTGGGTCCTAGGTTCTCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaatatatctcgtcatctgttaattgcttgataaagtatagttcattgttgattttatttatacaccatagaagcaaaaactagctgttacttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G152319_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g13790.1 (Oryza sativa), 5'ss of exon 4
ACTATTATCGTCTTGTTCGACGCATGAAGAAGCTATTGGGTCCTAGGTTCTCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaatatatctcgtcatctgttaattg-cttgataaagtatagttca------ttgttg----attttatttatacaccatagaagcaaaaactagctgttacttt
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ATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTCGGTCCTGAGTTCTCGCTCGATGCAAAAAATTCCAAGGACACCATTGCTGCTATGCTCTGCTGgtaattaaatgaatccc--tacgtgcaaatcaatctgattaggtgtgctttaagcttcttgttctattaatttatatatatagcatgattgcaaaaggtagt---------
upper sequence: GRMZM2G152319_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g56234.1 (Oryza sativa), 5'ss of exon 4
ACTATTATCGTCTTGTTCGACGCATGAAGAAGCTATTGGGTCCTAGGTTCTCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaatatatctcgtcatctgttaattg-cttgataaagtatagttc--attg-ttgattttatttatacaccatagaagcaaaaactagctgttacttt
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ATTACTATCGTCTTGTTCGACGCATGAAGAAACTTCTTGGTCCTGAGTTCTCACTTGATGCAAAAAATTCAAAGGACACTGTTGCTGCTATGCTCCGCTGgtaacggaatgaatgtctgcat--gcaaattaatctgattagatgtggtccctactgcttgatattatttatataacatgattgcaaagggtagtgtttggc--
upper sequence: GRMZM2G152319_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv08s0040g01460.t01 (Vitis vinifera), 5'ss of exon 4
ACTATTATCGTCTTGTTCGACGCATGAAGAAGCTATTGGGTCCTAGGTTCTCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaatatatctcgtcatctgttaattgcttgataaagtatagttcattgttgattttatttatacaccatagaagcaaaaactagctgttacttt-------------
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ATTACTATCGTCTGGTGAGGCGTATGAACAAGCTGTTAGGTCCAGGATTCTCTCTGGATGCAAAAAACTCTAAGGATACTAATGCTGCGATGctgcgatggtaac-----------cattaactattgattaatttattgccttttatccagatttcaatta--ttatatgctagaggatcttttttttcttttcttttttaacttaagatggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18165901|gb|BM335740.1|BM335740EST: TCACTTGATGCAGAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTG GTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAA
genomic: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaat ... tttgatgcagGTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTATTATCGTCTTGTTCGACGCATGAAGAAGCTATTGGGTCCTAGGTTCTCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaatatatctcgtcatctgttaattgcttgataaagtatagttcattgttgattttatttatacaccatagaagcaaaaactagctgttacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaaa