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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATAGGGCATGGCCATTACTTGAGCTGCATGGGGATTTACTGGCACCCTCAGTGCTTCCGCTGCAACTCCTGCGGCCACCCTATCCGTGAGACCGAGgcatgcaagctactccccctccctccatttcaagttacagtgttagtatcagagatggtaatacccgttcttgtttcttcctgttctccag

Basic information

species Zea mays
transcript GRMZM2G151934_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151934_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g16090.2 (Oryza sativa), 5'ss of exon 4
TGAGATAGGGCATGGCCATTACTTGAGCTGCATGGGGATTTACTGGCACCCTCAGTGCTTCCGCTGCAACTCCTGCGGCCACCCTATCCGTGAGACCGAGgcatgcaagctac--tccccctccctccatttcaagttaca-gtgttagtatcagagatggtaatacccgttcttgtttcttcctgttctccag
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TGAGATAGGGCATGGCCATTACTTGAGCTGCTTGGGAATGTACTGGCACCCTCAGTGCTTCCGCTGTTCTTCCTGTCGCCACCCTATCCGTGAGATGGAGgtaacctttctgcaattcagtttagaatgtctgaaggtgtgtgtgttcaggtgttctcaggaagtgacagtt--tactttattctgtttcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211091867|gb|FL133027.1|FL133027
EST:     CTCAGTGCTTCCGCTGCAACTCCTGCGGCCACCCTATCCGTGAGACCGAG                         TTCACATTACTGAGTACAGATCCATACCACAAGCTGTGCTACAAGGAGCTG
genomic: CTCAGTGCTTCCGCTGCAACTCCTGCGGCCACCCTATCCGTGAGACCGAGgcatgcaagc ... tgttctccagTTCACATTGCTGAGTACAGATCCATACCACAAGCTGTGCTACAAGGAGCTG
EST: gi|13558939|gb|BG550294.1|BG550294
EST:     CTCAGTGCTTCCGCTGCAACTCCTGCGGCCACCCTATCCGTGAGACCGAG                         TTCACATTGCTGAGTACAGATCCATACCACAAGCTGTGCTACAAGGAGCTG
genomic: CTCAGTGCTTCCGCTGCAACTCCTGCGGCCACCCTATCCGTGAGACCGAGgcatgcaagc ... tgttctccagTTCACATTGCTGAGTACAGATCCATACCACAAGCTGTGCTACAAGGAGCTG