1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcctttttacaatatagcctttgcatatgcatagtgcagctcatttgttgtgttgtatgccatgttattgttctgaacattgggggtggggcc...
species | Zea mays |
transcript | GRMZM2G151863_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATCCCAGAAGAAGGAAATGGAAGAA GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCEST: gi|78073958|gb|DV502392.1|DV502392
genomic: GATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCEST: gi|71770353|gb|DR968290.1|DR968290
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: TTGCATGG-AATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCEST: gi|74239214|gb|DT647128.1|DT647128
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCEST: gi|88747529|gb|DY531670.1|DY531670
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCEST: gi|149055348|gb|EE156262.2|EE156262
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCEST: gi|60358343|gb|DN225316.1|DN225316
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCEST: gi|60348226|gb|DN215199.1|DN215199
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTCEST: gi|40335107|gb|CK369177.1|CK369177
genomic: TTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
EST: GGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA GTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
genomic: GGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcc ... gtgtgatcagGTAGAAGAGAAGCTTGAGTCGGGTCAAGGGAAATCAACCATCCGTAGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAAgtacgtgtcctttttacaatatagcctttgcatatgcatagtgcagctcatttgttgtgttgtatgccatgttattgttctgaacattgggggtggggcc
- - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA