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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgttcttttagcgttgaatgtttttcatatcttcatgctgacactcatattgtatattgctgatgtaagcattatgcaagttctgtgttatcc...

Basic information

species Zea mays
transcript GRMZM2G151863_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g28300.1 (Oryza sativa), 5'ss of exon 5
GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgttctt--ttagcg-----ttgaatgtttttcatatcttcatgctgacactcatattgtatattgctgatgtaagcattatgcaagttctgtgttatcc
||| | |||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||  |||| |          |||||           |||||    |     ||  ||||      ||||    | ||||  |     ||  |   
GTACTATCAACTGGACTTGGTAGGATAGTCCCCAACTTGATATCAAGGAAGCACACTAACAGTGCTGCTACAGgtacttattttcttacttagtgagtttccaggtgtttgcttcgggagtatgctagttcatgcttttcatatc-----tgtagttgtcatgctggcatgctggcag--

upper sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA18G47670.1 (Glycine max), 5'ss of exon 5
GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtact-tatgttcttttagcgttgaatgtttttcatatcttcatgctgacactcatattgtatattgctgatgtaagcattatgcaagttctgtgttatcc--
||| | || || || |||||||| || ||||| || ||||| || |||||||| || ||||||||||||||||||||  | | |   |||     | | |  |   || || | |||  |   | |  |   | || ||||  |        |||   |     | | ||      
GTACTTTCTACAGGGCTTGGCAGGATTGTGCCAAATTTGATTTCTAGGAAGCATACGAATAGTGCTGCTACAGgtacaatttctgggtttgatacttatttctgagcagatttacatattataatttgt---gaattttgcaaaaaagcaggttaaaaagtaattattttgaatta

upper sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G38640.1 (Glycine max), 5'ss of exon 5
GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtact-tatgttcttttagcgttgaatgtttttcatatcttcatgctgacactcatattgtatattgctgatgtaagcattatgcaagttctgtgttatcc--
||| | || || || |||||||| || ||||| || ||||| || |||||||| || ||||||||||||||||||||  | | |   |||     | | || |   || || | |||  |   | |  |   | || ||||  |        |||   |     | | ||      
GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAGCATACAAATAGTGCTGCTACAGgtacaatttctgggtttgatacttattgctgagcagatttacatattataatttgt---gaattttgcaaaaaagcaggttaaaaagtaattattttgaatta

upper sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G36290.1 (Arabidopsis thaliana), 5'ss of exon 6
GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtactta-tgttcttttagcgt-tgaatgt----ttttcatatcttcatgctgacactcatattgtatattgctgatgtaagcattatgcaagttctgtgttatcc
 || | || ||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||||||||  || |  |||  ||  || ||| |||    ||  ||   ||  |   |     |  ||  | || |||||    |||      ||  ||| || ||      
ATACTTTCTACTGGACTTGGTAGGATAGTGCCAAACTTGATATCGAGGAAGCACACCAATAGTGCTGCTACAGgtatgtagttctctcatatggtgtgagtgtgacattgccaatactatagttttgggtttttaaagaat-ttgctagcttaaatgaattgagagtgctatgc-----

upper sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv04s0023g00380.t01 (Vitis vinifera), 5'ss of exon 5
GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgttcttttagcgttgaatgtttttcatatcttcatgctgacactcatattgtatattgctgatgtaagcattatgcaagttctgtgttatcc---
||| | || ||||| |||||||| || ||||| || ||||||||||||||||| || |||||||| ||||||||||  ||  ||   ||    |      || ||    |     || | |   | |  || |||        | |    ||| |||   |||    ||||     
GTACTCTCCACTGGGCTTGGCAGGATTGTGCCAAATTTGATATCAAGGAAGCATACAAATAGTGCAGCTACAGgtatgtagtttacgtttttatgttgctttattgcagtgcatgtgttcatttttagtttttatgcaatgctttttcatattctgc---ttcctgattattttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76284808|gb|DV024376.1|DV024376
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|148955188|gb|EC900710.2|EC900710
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|101393554|gb|EB818709.1|EB818709
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|26558705|gb|CA830940.1|CA830940
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTGTTCTTTGGACTACGGTTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|211094829|gb|FL156527.1|FL156527
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTGTTCTTTGGACTACGGTTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|71433454|gb|DR814504.1|DR814504
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|148955189|gb|EC900711.2|EC900711
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|50336724|gb|CO531850.1|CO531850
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGA
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGA
EST: gi|93014798|gb|EB640318.1|EB640318
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|74242669|gb|DT650583.1|DT650583
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|74242668|gb|DT650582.1|DT650582
EST:     GGAAGCACACTAATAGGGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: GGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|74242877|gb|DT650791.1|DT650791
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|71757648|gb|DR955585.1|DR955585
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|14243778|gb|BG841491.2|BG841491
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|22473434|gb|BU037914.1|BU037914
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTGTTCTTTGGACTACGGTTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|71417678|gb|DR804170.1|DR804170
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|78073959|gb|DV502393.1|DV502393
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|71775511|gb|DR973389.1|DR973389
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|76291625|gb|DV031193.1|DV031193
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|16925694|gb|BM078762.1|BM078762
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|211089885|gb|FL156495.1|FL156495
EST:     ATAGTGCCCCACTTGATATCAAGGA-GCACACTAATAGTGCTNGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCT
genomic: ATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCT-GCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCT
EST: gi|89248372|gb|DY620158.1|DY620158
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|76284809|gb|DV024377.1|DV024377
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|78119849|gb|DV538233.1|DV538233
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|67010532|gb|CO439281.1|CO439281
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|211097292|gb|FL156531.1|FL156531
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGA
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGA
EST: gi|91048229|gb|EB158647.1|EB158647
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|71770354|gb|DR968291.1|DR968291
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|211094818|gb|FL156516.1|FL156516
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|71417675|gb|DR804169.1|DR804169
EST:     AATAGTGCCCAACTGGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTAATCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|148942936|gb|EC887981.2|EC887981
EST:     AATAGTGCCCCACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTTATTCTTTGGACTACGGCTGGCTGTATATTGCATGGAAATC
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTT-ATTCTTTGGACTACGGCTG-CTGTATATTGCATGGAAATC
EST: gi|74239215|gb|DT647129.1|DT647129
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|211087438|gb|FL156483.1|FL156483
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|91875143|gb|EB405100.1|EB405100
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCCT
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATC-T
EST: gi|86466281|gb|DY232652.1|DY232652
EST:     AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGAACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: AATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
EST: gi|74242876|gb|DT650790.1|DT650790
EST:     TCAAGGAAGCACACTAATAGTGCTGCTACAG                         TTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG
genomic: TCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 182

GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 173

GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 151

GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 203

GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgt ... tacctgccagTTTTGTACTTATTCTTTGGACTACGGCTGCTGTATATTGCATGGAAATCTGACCCAAAGGGATCCCAGAAGAAGGAAATGGAAGAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAGgtacttatgttcttttagcgttgaatgtttttcatatcttcatgctgacactcatattgtatattgctgatgtaagcattatgcaagttctgtgttatcc

- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT