1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TACACCAGCGATGAACTTGTGAAAGTAACTGAAGAACAAATTGCTGCATCAGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcattcctagtcttgcaatttcttgaactatttagtatttaccgtacctgaatctgcaaaggctcctagtttagtttgtgtttggctgggttaatttccaatctggagaataaaagagacagttacaagataaatttgctgcacattttttatgtttcagaag
species | Zea mays |
transcript | GRMZM2G151529_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|67010971|gb|CO439720.1|CO439720
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|67010971|gb|CO439720.1|CO439720
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|67010971|gb|CO439720.1|CO439720
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|67010971|gb|CO439720.1|CO439720
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|67010971|gb|CO439720.1|CO439720
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|67010971|gb|CO439720.1|CO439720
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|149077405|gb|EE166095.2|EE166095
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACACCCTGCATCGTCGCAACAGCAAG AEST: gi|149077405|gb|EE166095.2|EE166095
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACACCCTGCATCGTCGCAACAGCAAG AEST: gi|149077405|gb|EE166095.2|EE166095
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACACCCTGCATCGTCGCAACAGCAAG AEST: gi|149077405|gb|EE166095.2|EE166095
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACACCCTGCATCGTCGCAACAGCAAG AEST: gi|211314764|gb|FL362709.1|FL362709
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|211314764|gb|FL362709.1|FL362709
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|211314764|gb|FL362709.1|FL362709
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|211314764|gb|FL362709.1|FL362709
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|71433878|gb|DR814928.1|DR814928
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|71433878|gb|DR814928.1|DR814928
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|71433878|gb|DR814928.1|DR814928
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|71433878|gb|DR814928.1|DR814928
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|89252968|gb|DY624754.1|DY624754
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|89252968|gb|DY624754.1|DY624754
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|89252968|gb|DY624754.1|DY624754
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|89252968|gb|DY624754.1|DY624754
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|18177007|gb|BM378217.1|BM378217
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG TGTACACTACTCCGAGTGAGGACGCTCCTACATCAGGAGGAAGCGATGGTCEST: gi|93015586|gb|EB641106.1|EB641106
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaagTGTACACTACTCCGAGTGAGGACGCTCCTACATCAGGAGGAAGCGATGGTC
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|93015586|gb|EB641106.1|EB641106
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|93015586|gb|EB641106.1|EB641106
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|93015586|gb|EB641106.1|EB641106
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|18177055|gb|BM378265.1|BM378265
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG TGTACACTACTCCGAGTGAGGACGCTCCTACATCAGGAGGAAGCGATGGTCEST: gi|26557399|gb|CA829634.1|CA829634
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaagTGTACACTACTCCGAGTGAGGACGCTCCTACATCAGGAGGAAGCGATGGTC
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGAAGEST: gi|94474440|gb|EB703398.1|EB703398
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGC---AAGgtctggcatt ... gtttcaga
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|94474440|gb|EB703398.1|EB703398
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|94474440|gb|EB703398.1|EB703398
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG AEST: gi|94474440|gb|EB703398.1|EB703398
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
EST: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAG A
genomic: AGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcatt ... gtttcagaag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACACCAGCGATGAACTTGTGAAAGTAACTGAAGAACAAATTGCTGCATCAGCTGCTGCAGCTTGGAACCCGCAACAACCTGCATCGTCGCAACAGCAAGgtctggcattcctagtcttgcaatttcttgaactatttagtatttaccgtacctgaatctgcaaaggctcctagtttagtttgtgtttggctgggttaatttccaatctggagaataaaagagacagttacaagataaatttgctgcacattttttatgtttcagaag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG