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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTCGTGCCTTTCAGATCTGAGGAAGCTTATAGAGGCTCATTTCGAAGAAGTGGGCAGCAAACAGCAGCAGCAGCAGTTCATCTTCCTTCTCCTTGGGgtatgtcattcggctctatccatgtcatgctttcacccaagtgctctgtgctacgtgcttctcatcacaatggcgctcatctatcaccatgtactatctt...

Basic information

species Zea mays
transcript GRMZM2G150984_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150984_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g56540.1 (Oryza sativa), 5'ss of exon 5
---CAACTCGTGCCTTTCAGATCTGAGGAAGCTTATAGAGGCTCATTTCGAAGAAGTGGGCAGCAAACAGCAGCAGCAGCAGTTCATCTTCCTTCTCCTTGGGgtatgtcattcggctc---------tatccatgtcatgctttcacccaagtgctctgtgctacgtgcttctcatcacaatggcgctcatctatcaccatgtactatctt-------------------------------------------------------------------
   ||||||||| ||||| || ||||| |||||  | |||| ||| ||||||||||  || |||||   ||||||||||||||||| |||||| || || |||||| |||||   ||||         || | ||| |||||||||| ||||||| ||| |||||| |  | ||| |  ||||| |  ||||| |  | ||  |  |   ||                                                                   
GAGCAACTCGTGTCTTTCTGACCTGAGAAAGCTCTTGGAGGATCACTTCGAAGAAGCAGGGAGCAA---GCAGCAGCAGCAGTTCACCTTCCTCCTTCTCGGGgtacgtcatctagctcctctactactacctatgccatgctttcatccaagtgttctctgctacctcttcctccttgcaatgtcattcatccactatcacatcttgcattggaggatcgaatcttgtcagtgaaaacaaataaggagaaatatgtggggatctctgatttggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211411961|gb|FL105162.1|FL105162
EST:     AGCAAACAGCAGCAGCAGCAGTTCATCTTCCTTCTCCTTGGG                         GATCCGTCCGGTGCCCCGGTGTCCAGGGACAAGGAAGCCTCGGTGCAGATA
genomic: AGCAAACAGCAGCAGCAGCAGTTCATCTTCCTTCTCCTTGGGgtatgtcatt ... attggtgcagGATCCGTCCGGTGCCCCGGTGTCCAGGGACAAGGAAGCCTCGGTGCAGATA
EST: gi|78116215|gb|DV534602.1|DV534602
EST:     AAGTGGGCAGCAAACAGCAGCAGCAGCAGTTCATCTTCCTTCTCCTTGGG                         GATCCGTCCGGTGCCCCGGTGTCCAGGGACAAGGAAGCCTCGGTGCAGATA
genomic: AAGTGGGCAGCAAACAGCAGCAGCAGCAGTTCATCTTCCTTCTCCTTGGGgtatgtcatt ... attggtgcagGATCCGTCCGGTGCCCCGGTGTCCAGGGACAAGGAAGCCTCGGTGCAGATA
EST: gi|60352701|gb|DN219674.1|DN219674
EST:     AAGTGGGCAGCAAACAGCAGCAGCAGCAGTTCATCTTCCTTCTCCTTGGG                         GATCCGTCCGGTGCCCCGGTGTCCAGGGACAAGGAAGCCTCGGTGCAGATA
genomic: AAGTGGGCAGCAAACAGCAGCAGCAGCAGTTCATCTTCCTTCTCCTTGGGgtatgtcatt ... attggtgcagGATCCGTCCGGTGCCCCGGTGTCCAGGGACAAGGAAGCCTCGGTGCAGATA