1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacattatgtactagtatatgttattactgtcttgttctaaacttgcttggagatatatcaaaacatttaacgacagcattgaaagttgggatact...
species | Zea mays |
transcript | GRMZM2G150867_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|26559982|gb|CA832217.1|CA832217
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACEST: gi|211541018|gb|FL000893.1|FL000893
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAAC
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|37394410|gb|CF634479.1|CF634479
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|67018577|gb|CO447326.1|CO447326
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|166537158|gb|EG303387.1|EG303387
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAA-GGTGAAAG AGTACTGTGAAAAEST: gi|12971358|gb|BG267442.1|BG267442
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAA
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|211427762|gb|FL233520.1|FL233520
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: TGCTTATGAACAAAAGGTGAAAG AGTACTGTCAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|28984207|gb|BQ538996.2|BQ538996
genomic: TGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|15427006|gb|BI542828.1|BI542828
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTCAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|211427761|gb|FL233519.1|FL233519
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|32911041|gb|CF015853.1|CF015853
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTCAAAAATACGCCAAACCAGAGGATGCTGGGGTCAGCCCAGAAGEST: gi|5455873|gb|AI833563.1|AI833563
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|5525634|gb|AI861527.1|AI861527
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAGEST: gi|166603465|gb|EG175322.1|EG175322
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCEST: gi|211096443|gb|FL454804.1|FL454804
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGC
EST: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAG AGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
genomic: AGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacatt ... gtttttttagAGTACTGTGAAAAATACGCCAAACCAGAGGATGCTGGTGTCAGCCCAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGATCGCCCTGCTTATGAACAAAAGGTGAAAGgtaatacattatgtactagtatatgttattactgtcttgttctaaacttgcttggagatatatcaaaacatttaacgacagcattgaaagttgggatact
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