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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTATTTCAAAGGATGGAGCACTCCAAGTGTGGAAGACACGAGTTATAATAAACCCTAACAGACAACCAATGGAAACTCATTTCTTTGAGCGTGCAGgttatttttattcttacaattctttgagaaaattgagaatttctttaggccttagctatttcctcctgtcctctcaagctgcccttcttacttttaagttacatttcagggtttatttactcctttattttgtttgaaaatgatttctgcattaattttgcttgttaacattgcag

Basic information

species Zea mays
transcript GRMZM2G150772_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150772_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g24260.1 (Oryza sativa), 5'ss of exon 7
GTTACTATTTCAAAGGATGGAGCACTCCAAGTGTGGAAGACACGAGTTATAATAAACCCTAACAGACAACCAATGGAAACTCATTTCTTTGAGCGTGCAGgttatttttattcttacaattctttgagaaaattgagaatttctttaggccttagctatttcctcctgtcctctcaagctgcccttcttacttttaagttacatttcagggtttatttactcctttat-tttgtttgaaaatgatttctgcattaattttgcttgttaacattgcag
||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||| |||                               ||||  |        |||| ||   | | || |||||||||||  | ||  ||| ||| | | |||  |  | |  ||  ||  || || | |   ||                                        
GTTACAATTTCAAAGGATGGGGCACTTCAAGTATGGAAAACACGAGTTATAATTAATCCTAACAGACAACCTATGGAAACTCATTTCTTTGAGCATGCAGgttagttt------------------------------gtttccat--------gctacttatgcttttcttctcaagctgctttcctcccttataattcagattcaattgctatttccctggttaatatgtacctgg---------------------------------------

upper sequence: GRMZM2G150772_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTACTATTTCAAAGGATGGAGCACTCCAAGTGTGGAAGACACGAGTTATAATAAACCCTAACAGACAACCAATGGAAACTCATTTCTTTGAGCGTGCAGgttatttttattcttacaattctttgagaaaattgagaatttctttaggccttagctatttcctcctgtcctctcaagctgcccttcttacttttaagttacatttcagggtttatttactcctttattttgtttgaaaatgatttctgcattaattttgcttgttaacattgcag
|| ||| | || ||||||||| | || |||||||||||||||||||| ||||| || || || || |   | |   ||||  | |||||||||| ||| ||| |   | ||   |     |  | ||||||||  |   || ||    | |||||  ||         | | |      ||   |    ||||| |  ||||   |    |     |   |  ||| |||| |||| |                                      
GTCACTGTGTCCAAGGATGGATCTCTTCAAGTGTGGAAGACACGAGTAATAATTAATCCCAATAGGCCTTCGACACAAACAAACTTCTTTGAGCCTGCTGgtaagcctgatatct----cttatagagaaaatatatt-ttcctccccgacttaggaata-------attcccatggtttggtttggagactttga--ttacgcattgtagcactatccttttttttttttctttgcag-------------------------------------