Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   
18  
 5'  3'   
19  
 5'  3'   
20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTATTTCAAAGGATGGAGCACTCCAAGTGTGGAAGACACGAGTTATAATAAACCCTAACAGACAACCAATGGAAACTCATTTCTTTGAGCGTGCAGgttatttttattcttacaattctttgagaaaattgagaatttctttaggccttagctatttcctcctgtcctctcaagctgcccttcttacttttaagttacatttcagggtttatttactcctttattttgtttgaaaatgatttctgcattaattttgcttgttaacattgcag

Basic information

species Zea mays
transcript GRMZM2G150772_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150772_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g24260.1 (Oryza sativa), 5'ss of exon 7
GTTACTATTTCAAAGGATGGAGCACTCCAAGTGTGGAAGACACGAGTTATAATAAACCCTAACAGACAACCAATGGAAACTCATTTCTTTGAGCGTGCAGgttatttttattcttacaattctttgagaaaattgagaatttctttaggccttagctatttcctcctgtcctctcaagctgcccttcttacttttaagttacatttcagggtttatttactcctttat-tttgtttgaaaatgatttctgcattaattttgcttgttaacattgcag
||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||| | |||| || | | || ||||||||||| | || ||| ||| | | ||| | | | || || || || | | ||
GTTACAATTTCAAAGGATGGGGCACTTCAAGTATGGAAAACACGAGTTATAATTAATCCTAACAGACAACCTATGGAAACTCATTTCTTTGAGCATGCAGgttagttt------------------------------gtttccat--------gctacttatgcttttcttctcaagctgctttcctcccttataattcagattcaattgctatttccctggttaatatgtacctgg---------------------------------------

upper sequence: GRMZM2G150772_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTACTATTTCAAAGGATGGAGCACTCCAAGTGTGGAAGACACGAGTTATAATAAACCCTAACAGACAACCAATGGAAACTCATTTCTTTGAGCGTGCAGgttatttttattcttacaattctttgagaaaattgagaatttctttaggccttagctatttcctcctgtcctctcaagctgcccttcttacttttaagttacatttcagggtttatttactcctttattttgtttgaaaatgatttctgcattaattttgcttgttaacattgcag
|| ||| | || ||||||||| | || |||||||||||||||||||| ||||| || || || || | | | |||| | |||||||||| ||| ||| | | || | | | |||||||| | || || | ||||| || | | | || | ||||| | |||| | | | | ||| |||| |||| |
GTCACTGTGTCCAAGGATGGATCTCTTCAAGTGTGGAAGACACGAGTAATAATTAATCCCAATAGGCCTTCGACACAAACAAACTTCTTTGAGCCTGCTGgtaagcctgatatct----cttatagagaaaatatatt-ttcctccccgacttaggaata-------attcccatggtttggtttggagactttga--ttacgcattgtagcactatccttttttttttttctttgcag-------------------------------------