Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGAAGTTTCAATTGGACAACAAAGGGTTCGGCTCTACATCATAACAGGGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatagttctgattcctgaatcttgttcccatcgcttttattggcagtgatgcacctttactttccaaggcttattgctgctctccttggtcgattgcccttcgttgtacatttttttgtttctgttgttttcttttctcttctaaaaaagtataaaatgatccactgagatatcttcctctgcaaatctgttag

Basic information

species Zea mays
transcript GRMZM2G150209_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558397|gb|CA830632.1|CA830632
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|149105392|gb|EE290900.2|EE290900
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|149076762|gb|EE165408.2|EE165408
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|71763175|gb|DR961112.1|DR961112
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|6469019|gb|AW191795.1|AW191795
EST:     CTCAAACCAAGAAGGAAATCAGT                         GAAATTTCATGGCNCAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: CTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|67023920|gb|CO452669.1|CO452669
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|87156906|gb|DY401695.1|DY401695
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|110963433|gb|EE183333.1|EE183333
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|5325088|gb|AI783279.1|AI783279
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATCAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|5846898|gb|AI999981.1|AI999981
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATCAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|22133528|gb|BQ833762.1|BQ833762
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|76916674|gb|DV166495.1|DV166495
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|91870113|gb|EB400708.1|EB400708
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|78084663|gb|DV513056.1|DV513056
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAACCCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTCCCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|74238912|gb|DT646826.1|DT646826
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|60291833|gb|DN190072.1|DN190072
EST:     GGGTTAAAAGAGACACTGTGTTTGCACGTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|78087169|gb|DV515562.1|DV515562
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|211134459|gb|FL464550.1|FL464550
EST:     GCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|18383494|gb|BM416694.1|BM416694
EST:     GCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|211233125|gb|FL455326.1|FL455326
EST:     CAAGAAGGAAATCAGT                         GAAATTTCATGGCACAGAATTGACGACCTCTTACCAGCTAGTGATGATGCA
genomic: CAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|78087974|gb|DV516367.1|DV516367
EST:     GGGTTAAAAGAGACACGGGGTTTGCACCTCAAACCAAGAGGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|78104490|gb|DV522908.1|DV522908
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|94475807|gb|EB704765.1|EB704765
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|78122727|gb|DV541111.1|DV541111
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|18383699|gb|BM416899.1|BM416899
EST:     CAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: CAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: gi|5566698|gb|AI881714.1|AI881714
EST:     GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT                         GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTGAAGTTTCAATTGGACAACAAAGGGTTCGGCTCTACATCATAACAGGGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatagttctgattcctgaatcttgttcccatcgcttttattggcagtgatgcacctttactttccaaggcttattgctgctctccttggtcgattgcccttcgttgtacatttttttgtttctgttgttttcttttctcttctaaaaaagtataaaatgatccactgagatatcttcctctgcaaatctgttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA