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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTCGTATTATTCAGAAACTTGGTTTTCCAGCTAAATTCAAGgtagctattttcatactcgtgtacagatctgagctttgaacaatttgtacatcagtcactaagttgctgttctatgccag

Basic information

species Zea mays
transcript GRMZM2G149238_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 6
TATGCTCGTATTATTCAGAAACTTGGTTTTCCAGCTAAATTCAAGgtagctattt----------tcatactcgtgtacagatctgagctttgaaca--------atttgtacatcagtcactaagttgctgttctatgccag
|| ||||||||||| ||||| ||||| ||||| ||||||||||||||| ||||||          | ||  || | |    || ||       || |        | |||||| | | |   ||| |   ||  |||| ||||
TACGCTCGTATTATCCAGAAGCTTGGCTTTCCTGCTAAATTCAAGgtaactatttcaagcttgcttgattttcatctgtgcatgtgcctaccaaatacattctgtaattgtacctaactgtttaactcattgcactataccag

upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 5
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 6
TATGCTCGTATTATTCAGAAACTTGGTTTTCCAGCTAAATTCAAGgtagctattttcatactcgtgtacagatctgagctttgaacaatttgt---acatcagtcactaagttgctgttctatgccag-------------------------------------------
|||||||| ||||||||||| || ||||||||||||||||| ||||||  ||||    |||   | |     |||| | | |   |||||| |   |    | ||      ||| | || |    | |                                           
TATGCTCGAATTATTCAGAAGCTCGGTTTTCCAGCTAAATTTAAGgtatttattccattacatctctctctctctgtgatgtagccaatttctgttatgctattcttctccttgtttttttgccactgttcttattttatattgactgctgttttttattgtgggatgtag