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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATGAAAACAAGCACTAATACATTGGAGAATCTGTTTGCTGTTTTTGTCTCGACATCGGGTTTGGTTCTATTTGCACTACTTATTGGTAATGTGCAGgtacagacactattttggcactgttgatattttcttgtaatgtatgttgttcaattaagtggtaactaattagtattaataaggccaacatatggaaatg...

Basic information

species Zea mays
transcript GRMZM2G148118_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148118_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g15580.3 (Oryza sativa), 5'ss of exon 5
GAACATGAAAACAAGCACTAATACATTGGAGAATCTGTTTGCTGTTTTTGTCTCGACATCGGGTTTGGTTCTATTTGCACTACTTATTGGTAATGTGCAGgtacagacactattttggcactgttgatattttcttgtaatgtatgttgttcaattaagtggtaactaattagtattaataaggccaacatatggaaatg-------
 ||  | || ||||||||  |||||| ||||||||| ||||||||||| ||||||||||| ||| | ||| | |||||||| |||||||||||||||||||||  ||   |||       |   ||  || || || | |||    |  ||  ||||||| || | || ||  |||  ||    |     |   | |          
AAATCTTAAGACAAGCACGTATACATGGGAGAATCTATTTGCTGTTTTCGTCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAGgtatggaatatat-------caactgtcatatttttattatgatcataattggattaagtagttaatattttttatatatgcaacttgtgtggagtatcttttttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56691652|gb|CX129555.1|CX129555
EST:     TCTCGACATCGGGTTTGGTTCTATTTGCACTACTTATTGGTAATGTGCAG                         ACCTATTTACAGTCAGCTTCTGTGCGTATCGAAGAAATGAGAGTGAAAAGG
genomic: TCTCGACATCGGGTTTGGTTCTATTTGCACTACTTATTGGTAATGTGCAGgtacagacac ... gtgattgcagACCTATTTACAGTCAGCTTCTGTGCGTATCGAAGAAATGAGAGTGAAAAGG