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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGAGGTGTTGATCGAAGTGATGTAAAACCACTTATCATCAATCAGCCTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgtttgttgaactgcagtgctagtattaacataatgtcttctgaaataaataacacttaatggttatggcag

Basic information

species Zea mays
transcript GRMZM2G147884_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 6
AAGAGGAGGTGTTGATCGAAGTGATGTAAAACCACTTATCATCAATCAGCCTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgta-attgtttgttgaa--------ctgcagtgctagtattaacataa------tgtcttctgaaataaataacact--taatggttatg-gcag
 ||||| |||||||||||||||||| | ||||| ||||| |||||||| |||||||| || || || || ||||| || |||||||||||||||||||||||  ||||||   | ||        ||    || |   || |||| ||      |  |  ||| ||| |||||||||  ||||| |  || ||||
GAGAGGTGGTGTTGATCGAAGTGATTTGAAACCTCTTATTATCAATCAACCTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgttgtgtaaagcttttctctattatgatgagataaacaaaaaaatatttccccctggaattaataacacttttaatgatgttgagcag

upper sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 5
AAGAGGAGGTGTTGATCGAAGTGATGTAAAACCACTTATCATCAATCAGCCTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgtttgttgaactgcagtgctagtat-taacataatgtcttctgaaataaataacacttaatggtta-tggcag---------------------
  |||| ||   |||| ||||||||||||||||  |    || | ||||||||| |||||||| || ||  | ||||| |||||||| |||||||||||||||  ||||   | | ||  | || |  | | | |    |  | | |  | |||  | |  | |  |   || | |                        
CCGAGGTGGCTCTGATAGAAGTGATGTAAAACCCTTGCAAATTATTCAGCCTGAAGGTCCAAGCTTCCGTGTCAATGGGTATTTTGTTGAATGGCAGAAGgtagatgttaagtta-ctatattgtttatttgtcattggaaatgtgcaaagatatttgattcattgtaactactagtcttttttctttctcttttaacag

upper sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 5
AAGAGGAGGTGTTGATCGAAGTGATGTAAAACCACTTATCATCAATCAGCCTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgtttgtt----gaactgcagtgctagta--ttaacataatgtcttctgaaataaataacacttaatggttatggcag-------------
| | ||||||||||||||||||||||| |||||  |    |||| ||| ||||| || || || |||||  ||||||| || ||||| |||||||||||||| |||   | ||     || |    | || | |  |  |  |     || ||  |     || ||  || |  |  |   |              
ACGTGGAGGTGTTGATCGAAGTGATGTGAAACCCTTGCAAATCATTCAACCTGAAGGACCTAGCTTTCGTGTTAATGGGTACTTTGTTGAATGGCAGAAGgtgattacctttttgggaaagtaggttactggaaaatctaagttcaacctgctatatggcttatcatctatttttatttttattcctcattggcag

upper sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 5
AAGAGGAGGTGTTGATCGAAGTGATGTAAAACCACTTATCATCAATCAGCCTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaatt---gtttgttgaactgcagtgctagta-------ttaacat----aatgtcttctgaa-ataaataacacttaatggttatggcag----
||||||||||||||||||||||||||| || || ||    ||   |||||| || |||||||| |||||  |  ||||  | | ||| ||||||||||||||| ||   |||| |||| |||   || || ||       ||||  |     |||  | || || |  |  ||   || ||  || |||  |    
AAGAGGAGGTGTTGATCGAAGTGATGTGAAGCCGCTACAGATTGTTCAGCCAGAAGGTCCAAGCTTTCGTGTACATGGGCACTATGTAGAATGGCAGAAGgtacttttggtttcttgagctggcttgttaataaatgtaattaaagtcagagatgcatactaaacactatcaatgttttatctttttggttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028492|gb|CO457241.1|CO457241
EST:     CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAG                         TGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
genomic: CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgttt ... gttatggcagTGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
EST: gi|211180988|gb|FL326379.1|FL326379
EST:     CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAG                         TGGAACTTCCGTATTGGCTTCNCCCCCAAAGAGGGTTTGGTTATCTATTCT
genomic: CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgttt ... gttatggcagTGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
EST: gi|67010284|gb|CO439033.1|CO439033
EST:     CTGAGTTTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAG                         TGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
genomic: CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgttt ... gttatggcagTGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
EST: gi|211285878|gb|FL038891.1|FL038891
EST:     CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAG                         TGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
genomic: CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgttt ... gttatggcagTGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
EST: gi|31348944|gb|CD433301.1|CD433301
EST:     AATTAATGGCTATTTTGTGGAATGGCAGAAG                         TGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
genomic: AATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgttt ... gttatggcagTGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
EST: gi|47961763|gb|CN844472.1|CN844472
EST:     CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAG                         TGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
genomic: CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgttt ... gttatggcagTGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
EST: gi|18661626|gb|BM501497.1|BM501497
EST:     CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAG                         TGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
genomic: CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgttt ... gttatggcagTGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT
EST: gi|211285881|gb|FL038894.1|FL038894
EST:     CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAG                         TGNAACTTCCGTATTGGCTTCACCCCCAAAGAGGGNTTGGNTATCTATTCT
genomic: CTGAGGGTCCAAGTTTTCGAATTAATGGCTATTTTGTGGAATGGCAGAAGgtaattgttt ... gttatggcagTGGAACTTCCGTATTGGCTTCACCCCCAAAGAGGGTTTGGTTATCTATTCT