Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATCATCGCTCTTGCTCTAGATCTAGACGTGGACTTCTTCGATAGACCTGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaagaaacaggtcatgccttcgtgtcagacgggtattttaccccgcaaggaacatgacgagtcctgtcgtttgatgttctttctatcgccag

Basic information

species Zea mays
transcript GRMZM2G147882_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147882_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g09300.3 (Oryza sativa), 5'ss of exon 5
AGGATCATCGCTCTTGCTCTAGATCTAGACGTGGACTTCTTCGATAGACCTGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaagaaacaggtcatgccttcgtgtcagacgggtattttaccccgcaaggaacatgacgagtcctgtcgtttgatgttctttctatcgccag
||||| || || ||||||||| | ||||| | ||||||||| |||| ||| ||||||||||||||| ||||||||||  ||||||||||||| || |||||||||||| ||||||||||||| ||| || |   | | |||||||   | |||| ||||| |||| | |||||||||||||||| || | ||  |||
AGGATTATTGCCCTTGCTCTAAACCTAGAAGAGGACTTCTTTGATAAACCAGAAATGCTTGGCGAGCCCATAGCCACATTAAGGCTCCTGCATTATGAAGgtggacaaaaaacaggtcatgcattcttgccgttcag-tattttattacacaagaaacataacgaattctgtcgtttgatgttccttttttcatcag

upper sequence: GRMZM2G147882_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g09300.2 (Oryza sativa), 5'ss of exon 5
AGGATCATCGCTCTTGCTCTAGATCTAGACGTGGACTTCTTCGATAGACCTGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaagaaacaggtcatgccttcgtgtcagacgggtattttaccccgcaaggaacatgacgagtcctgtcgtttgatgttctttctatcgccag
               |||||| | ||||| | ||||||||| |||| ||| ||||||||||||||| ||||||||||  ||||||||||||| || |||||||||||| ||||||||||||| ||| || |   | | |||||||   | |||| ||||| |||| | |||||||||||||||| || | ||  |||
---------------GCTCTAAACCTAGAAGAGGACTTCTTTGATAAACCAGAAATGCTTGGCGAGCCCATAGCCACATTAAGGCTCCTGCATTATGAAGGTGGACAAAAAACAGgtcatgcattcttgccgttcag-tattttattacacaagaaacataacgaattctgtcgtttgatgttccttttttcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32925957|gb|CF030769.1|CF030769
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926415|gb|CF031227.1|CF031227
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926466|gb|CF031278.1|CF031278
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926635|gb|CF031447.1|CF031447
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926849|gb|CF031661.1|CF031661
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|71437198|gb|DR818248.1|DR818248
EST:     TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926430|gb|CF031242.1|CF031242
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926417|gb|CF031229.1|CF031229
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCCAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32925395|gb|CF030207.1|CF030207
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|76287315|gb|DV026883.1|DV026883
EST:     TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|71758494|gb|DR956431.1|DR956431
EST:     TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926166|gb|CF030978.1|CF030978
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926025|gb|CF030837.1|CF030837
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32925152|gb|CF029964.1|CF029964
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|71429425|gb|DR810475.1|DR810475
EST:     TCCATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|76287314|gb|DV026882.1|DV026882
EST:     AAGGCTCCTGCACTACGAAG                         GTAAGGT-TACAGATCCTGCAAAGGGTG-TTACGGGAGCGGGCGCCCATTC
genomic: AAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGT-CAGATCCTGCAAAGGGTGTTTAC-GGAGCGGGCGCCCATTC
EST: gi|78117759|gb|DV536146.1|DV536146
EST:     TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926219|gb|CF031031.1|CF031031
EST:     TGAAATGCTTGGTGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|78078283|gb|DV506698.1|DV506698
EST:     TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926072|gb|CF030884.1|CF030884
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926162|gb|CF030974.1|CF030974
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32926197|gb|CF031009.1|CF031009
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|78078284|gb|DV506699.1|DV506699
EST:     TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGGTTACGGAGCGGGCG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCG
EST: gi|32925587|gb|CF030399.1|CF030399
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGGAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32925272|gb|CF030084.1|CF030084
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32925426|gb|CF030238.1|CF030238
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
EST: gi|32925266|gb|CF030078.1|CF030078
EST:     TGAAATGCTTGGCGAGTCAATAGCCACGCTAAGGCTCCTGCACTACGAAG                         GTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG
genomic: TGAAATGCTTGGCGAGTCCATAGCCACGCTAAGGCTCCTGCACTACGAAGgtggacaaga ... ctatcgccagGTAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAG