1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTACAGAGTCATTAGAACTACACAAAATTAAGAGCCGCCAATGGGCGATTTTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtggggtcaaattttcatgtcctaagcgatgtttctgtaagataatgacaagtggatgaacttctttaataaaccattcgtatcatcagttaaaat...
species | Zea mays |
transcript | GRMZM2G147726_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAAEST: gi|18181584|gb|BM382794.1|BM382794
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAA
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|60396369|gb|DN229238.1|DN229238
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|32945768|gb|CF050587.1|CF050587
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|5456152|gb|AI833842.1|AI833842
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|211104194|gb|FL471169.1|FL471169
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|31611779|gb|CD568401.1|CD568401
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|149086485|gb|EE176030.2|EE176030
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|60346093|gb|DN213066.1|DN213066
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|29946538|gb|CB816199.1|CB816199
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|6994080|gb|AW453294.1|AW453294
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|44901570|gb|CK828115.1|CK828115
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|14646131|gb|BI180320.1|BI180320
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|71426509|gb|DR807559.1|DR807559
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|12973349|gb|BG268436.1|BG268436
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|14203130|gb|BG836807.1|BG836807
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|211068733|gb|FL060710.1|FL060710
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|60399097|gb|DN231911.1|DN231911
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|32906937|gb|CF011750.1|CF011750
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTTCGCCTCGTCEST: gi|71775316|gb|DR973194.1|DR973194
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|29544164|gb|CB604544.1|CB604544
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|78110076|gb|DV528491.1|DV528491
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|18175608|gb|BM350861.1|BM350861
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|21809994|gb|BQ668312.1|BQ668312
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTCEST: gi|33092385|gb|CF052379.1|CF052379
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
EST: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTG GCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
genomic: TTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtgggg ... attattgcagGCTCAGTAACACGCTCAAATCTGGAAGCAGCTAAGGAGCCTCCGCCTCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACAGAGTCATTAGAACTACACAAAATTAAGAGCCGCCAATGGGCGATTTTCAAAACATCTGCAATAAAGGGAGAGGGGCTCTTCGAAGGTTTGGACTGgtaagtggggtcaaattttcatgtcctaagcgatgtttctgtaagataatgacaagtggatgaacttctttaataaaccattcgtatcatcagttaaaat
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