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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCTTTCATCGAACCAGATTTGGAGACCGCACATATTAAGATCATCAACAAGTTCAACCCATTTTCAGGGTTCCAAAATCCTATGTACATTCTAAAGgtaggcctctcaagaaaaattcataattctgcaccagtgacatagtttcaactttcaacaaccaacattttttatgattaaccaagaaaattgtttaattgtgcactgcctgttggtcacatacacttgcag

Basic information

species Zea mays
transcript GRMZM2G147430_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 5
CAAGGCTTTCATCGAACCAGATTTGGAGACCGCACATATTAAGATCATCAACAAGTTCAACCCATTTTCAGGGTTCCAAAATCCTATGTACATTCTAAAGgtaggc-ctctcaagaaaaattc------ataattctgcaccagtgacatagt------ttcaactttcaacaaccaacatt-ttttatgattaaccaagaaa------attgtttaatt--gtgcactgcctgttggtcacatacacttgcag
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TAAGGCTTTCATTGAGCCAGACTTGCAGACAGCACATATAAAAATAATCAACAAGTTCAACCCATTCTCAGGGTTCCAAAATCCTATGTACATTCTAAAGgtaagcactccttatttatgttccttttagtgtccatgttttggcaagatggctgatcattgatctcttcaccaatagcataattttaatactaataaatacttgtcttgtggtttatctagatggcctaacttttggaaatgtactcttgcag