Sequence
atgc intronic sequence ATGC exonic sequenceTTCTTTCATTGCAAGTCCAAGGTGGCCAGGTCATTCAAGTTATGCACAAGTGATTGTTCCTCCCGGGCTTGTTCAGGTCCCAGGGTGGAGTCCTTATACTgtatgttctctgatctctgttttactttttacgtagcctaacaagttcatatttcatcaccttattacatggcacttacgatctggttatcaagaatgtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146514_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g28270.1 (Oryza sativa), 5'ss of exon 5
TTCTTTCATTGCAAGTCCAAGGTGGCCAGGTCATTCAAGTTATGCACAAGTGATTGTTCCTCCCGGGCTTGTTCAGGTCCCAGGGTGGAGTCCTTATACTgtatgttctctgatctctgttttactttttacgtagcctaacaagttcatatttcatcaccttattacatggcacttacgatctggttatcaagaatgtt
||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||| || |||||||||| ||||||| | ||||||| | || | ||| || ||| | | ||| || | ||| | || | || |||| | || | |||| |||||| |
TTCGTTTATTGCAAGTCCAAGGTGGCCAGGCCATTCTAGCTATGCACAAGTGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCAgtatgtttatttctcccactttgacatttacgatcgtctattaaatgtatactcatccagtggagtagatggtgcaattcattggtttattgagaatgct
upper sequence: GRMZM2G146514_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g21700.1 (Oryza sativa), 5'ss of exon 5
TTCTTTCATTGCAAGTCCAAGGTGGCCAGGTCATTCAAGTTATGCACAAGTGATTGTTCCTCCCGGGCTTGTTCAGGTCCCAGGGTGGAGTCCTTATACTgtatgttctctgatctctgttttactttttacgtagcctaacaagttcatatttcatcaccttattacatggcacttacgatctggttatcaagaatgtt--
|| || |||||||| || |||||||| || |||||| | ||||||||||| || ||||| | || |||||||| || |||||||||| ||||||| |||||||||| | || | || | || | | | | | | ||| || | | |||| ||| | | | ||| || ||
ATCATTTATTGCAAGCCCCAGGTGGCCTGGCCATTCAGGCTATGCACAAGTAATCGTTCCCCAGGGCCTTGTTCAAGTTCCAGGGTGGAATCCTTATGCTgtatgttccttacccttt-cttcatacttcaatttgtgcagttattcgctatcctattatgt-attatatgctcttcctcggcatgctatgctgatacttgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37423927|gb|CF649693.1|CF649693EST: TGATTGTTCCTCCCGGGCTTGTTCAAGTCCCAGGGTGGAGTCCTTATACT GCGCAAATTGGTTCTTCATCCTCGGAGGACCAACAACGGACACCTGGAGCT
genomic: TGATTGTTCCTCCCGGGCTTGTTCAGGTCCCAGGGTGGAGTCCTTATACTgtatgttctc ... aaatttgtagGCGCAAATTGGTTCTTCATCCTCGGAGGACCAACAACGGACACCTGGAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTTTCATTGCAAGTCCAAGGTGGCCAGGTCATTCAAGTTATGCACAAGTGATTGTTCCTCCCGGGCTTGTTCAGGTCCCAGGGTGGAGTCCTTATACTgtatgttctctgatctctgttttactttttacgtagcctaacaagttcatatttcatcaccttattacatggcacttacgatctggttatcaagaatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG