1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTAGAGACAACTCGCCATGTGTCGATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaaaacctgtcctctcgctacaaacacagaagaattttacagttgatagctttttccttccctaattcgtaaattgctgttcactgttttcagcttgcctgctcattattggttatgtttgatattgtacttag
species | Zea mays |
transcript | GRMZM2G146472_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGCTGEST: gi|211062365|gb|FL252795.1|FL252795
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTG
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTEST: gi|211059403|gb|FL252784.1|FL252784
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCT
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCEST: gi|211062364|gb|FL252794.1|FL252794
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATC
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGCTGEST: gi|211062361|gb|FL252791.1|FL252791
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTG
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATAC-AGCCACCTATCCCAGCTGEST: gi|149078577|gb|EE167361.2|EE167361
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTG
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGAEST: gi|149109057|gb|EE189984.2|EE189984
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGA
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGAEST: gi|211062360|gb|FL252790.1|FL252790
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGA
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGCTGAAGANGTGAAACCTGCTTTTGACTATGAEST: gi|211062359|gb|FL252789.1|FL252789
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGA
EST: ATGATCAMTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGCTGAAGAEST: gi|211059404|gb|FL252785.1|FL252785
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTGAAGA
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGCTGAAAGAGGTGAAACCTGCTTTTGACTATGEST: gi|29945425|gb|CB815632.1|CB815632
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTGAA-GAGGTGAAACCTGCTTTTGACTATG
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGAEST: gi|211062366|gb|FL252796.1|FL252796
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACCTGCTTTTGACTATGA
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGCTGAAGAAGTGGAACCCTGCTTTTEST: gi|211059402|gb|FL252783.1|FL252783
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGCTGAAGAGGTGAAACC-TGCTTTT
EST: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGG ATACCAGCCACCTATCCCAGC
genomic: ATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaa ... ttgtacttagATACCAGCCACCTATCCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTAGAGACAACTCGCCATGTGTCGATGATCACTGTGACACTGTCAAAGAACCCTCTGGATACATCATCTCCAGGgtaagtcaaaaacctgtcctctcgctacaaacacagaagaattttacagttgatagctttttccttccctaattcgtaaattgctgttcactgttttcagcttgcctgctcattattggttatgtttgatattgtacttag
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC